BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943752
Length=2245
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45290.1 | Symbols: | Transketolase | chr2:18672682-1867590... 1386 0.0
AT4G00114.1 | Symbols: | pseudogene of transketolase | chr4:40... 749 0.0
> AT2G45290.1 | Symbols: | Transketolase | chr2:18672682-18675906
FORWARD LENGTH=2598
Length=2598
Score = 1386 bits (750), Expect = 0.0
Identities = 1566/1958 (80%), Gaps = 63/1958 (3%)
Strand=Plus/Plus
Query 233 GTCTCTGGTAGACAAATCGGTCAATACGATCAGGTTCCTGGCGATCGATGCGGTCGAGAA 292
||| ||||| || || ||||| || ||||||||||| ||||| || |||||||| |||||
Sbjct 289 GTCCCTGGTTGATAAGTCGGTGAACACGATCAGGTTTCTGGCAATAGATGCGGTTGAGAA 348
Query 293 AGCCAAATCGGGTCACCCGGGACTGCCTATGGGATGTGCCCCAATGGGC-CATATATTGT 351
|| ||||| ||||| || || || |||||||| ||||| || || | | || || ||||
Sbjct 349 GGCGAAATCAGGTCATCCAGGTCTTCCTATGGGCTGTGCTCCGAT-GTCTCACATTTTGT 407
Query 352 TCGACGAAGTGATGCAA-TACAACCCAAAGAACCCTTTCTGGTTCAACAGAGATCGTTTC 410
||| ||||| ||| || || ||||| ||||| |||| |||||| ||| | |||||||||
Sbjct 408 ACGATGAAGTCATG-AAGTATAACCCCAAGAATCCTTACTGGTTTAACCGTGATCGTTTC 466
Query 411 ATTTTGTCTGCCGGTCATGGTTGCATGCTCCAGTACGCCT-TGCTTCACCTCGCTGGCTA 469
|| | ||||| || ||||| |||||| | || |||| || |||||||||| ||||||||
Sbjct 467 GTTCTCTCTGCTGGACATGGATGCATGTTGCAATACG-CTCTGCTTCACCTTGCTGGCTA 525
Query 470 CGACAGTGTCAGGGAAGATGATTTGAAGAATTTTCGTCAGTGGGGAAGTAGGACTCCAGG 529
|||||| || ||||| || |||||||||| || ||||| |||||||||| |||||||||
Sbjct 526 CGACAGCGTTAGGGAGGAAGATTTGAAGAGCTTCCGTCAATGGGGAAGTAAGACTCCAGG 585
Query 530 ACATCCCGAGAATTTTGAGACTCCTGGTGTTGAAGTCACCACTGGTCCACTTGGGCAAGG 589
|||||| |||||||||||||||||||||||||||| ||| |||||||| ||||| |||||
Sbjct 586 ACATCCTGAGAATTTTGAGACTCCTGGTGTTGAAGCCACTACTGGTCCTCTTGGACAAGG 645
Query 590 AATTGCAAATGCTGTTGGTTTGGCACTTGCGGAGAAGCATTTGGCTGCCAGGTTCAACAA 649
|||||||||||||||||||| || ||||||||||||||||||||||| || || |||||
Sbjct 646 TATTGCAAATGCTGTTGGTTTAGCTCTTGCGGAGAAGCATTTGGCTGCTAGATTTAACAA 705
Query 650 ACCTGGCAATGAGATTGTCGACCATTACACGTACGCTATTCTCGGAGATGGATGTCAGAT 709
||||| |||||||||||| ||||| |||||||| | ||||| |||||||| ||||||||
Sbjct 706 ACCTGACAATGAGATTGTTGACCACTACACGTATTCGATTCTTGGAGATGGTTGTCAGAT 765
Query 710 GGAAGGAATTGCAAATGAAGCTTGTTCTCTTGCAGGGCACTGGGGTCTGGGGAAGCTCAT 769
|||||| ||| ||||||||| ||| ||||| || || |||||||| || || ||||| ||
Sbjct 766 GGAAGGGATTTCAAATGAAGTTTGCTCTCTAGCTGGTCACTGGGGACTTGGAAAGCTAAT 825
Query 770 TGCCTTT-TATGATGACAACCACATTTCTATTGACGGTGACACGGAGATTGCCTTTACCG 828
|| ||| || |||||||| |||||||| ||||| || ||||| || ||||| |||||||
Sbjct 826 CGC-TTTCTACGATGACAATCACATTTCCATTGATGGAGACACAGATATTGCTTTTACCG 884
Query 829 AGAATGTGGA-AACACG-TTTCCAGGGTCTTGGTTGGCATGTTATATGGGTCAAGAATGG 886
||| ||||| || ||| ||| || |||||| ||||||||||| ||||| ||||||||
Sbjct 885 AGAGCGTGGACAA-ACGCTTTGAAGC-TCTTGGATGGCATGTTATCTGGGTAAAGAATGG 942
Query 887 AAACACCGGTTATGATGAAATCCGTGCTGCCATTAAGGAAGCTAAGGCTGTTAA-AGACA 945
||||| ||||||||||| |||||||||||||||| ||||||||||||||| || |||||
Sbjct 943 AAACAATGGTTATGATGAGATCCGTGCTGCCATTAGGGAAGCTAAGGCTGT-AACAGACA 1001
Query 946 AACCCACTTTGATCAAGATAACTACAACAATTGGTTATGGATCACCAAACAAGGCAAATT 1005
| ||||||||||| ||| | ||||| |||||||||||||| || || ||||||||||| |
Sbjct 1002 AGCCCACTTTGATTAAGGTCACTACTACAATTGGTTATGGTTCTCCCAACAAGGCAAACT 1061
Query 1006 CTTACAGTGTTCACGGAAG-TGCACTGGGTGAAAAAGAAGTTGATGCTACCAGAAAGAAT 1064
| |||||||| || ||| | ||| || ||||| || |||||||| |||||| |||| |||
Sbjct 1062 CATACAGTGTCCATGGA-GCTGCGCTTGGTGAGAAGGAAGTTGAGGCTACCCGAAACAAT 1120
Query 1065 CTTGGATGGCCATATGGGCCTTTCCATGTTCCTGAAGATATCAAGAGCCACTGGAGTCGT 1124
||||| |||||||||| ||| |||||||| ||||| ||| |||| ||||| ||||| |||
Sbjct 1121 CTTGGGTGGCCATATGAGCCGTTCCATGTACCTGAGGATGTCAAAAGCCATTGGAGCCGT 1180
Query 1125 CATAT-CCCTAAAGGAGCTGCTCTCGAAACAGAATGGAATGCTAAGTTTGCTGACT-ATG 1182
|| | ||| || || |||||||| ||| | || |||||||| || ||||| | || |||
Sbjct 1181 CACACGCCCGAAGGG-GCTGCTCTTGAAGCTGATTGGAATGCCAAATTTGCAG-CTTATG 1238
Query 1183 AGAAGAAGTACCCACAAGAAGCTGCAGAACTGAAATCTAT-AGT-TACTGTT-AACTTAC 1239
||||||| || || | ||||||||||| |||||||||| | | | | | | || || |
Sbjct 1239 AGAAGAAATATCCGGAGGAAGCTGCAGAGTTGAAATCTATTA-TCT-CAGGTGAA-TTGC 1295
Query 1240 CTACTGGCTGGGAAAAATCA-TTGCCGACTTACACGCCCGAGAGTCCTGCAGATGCAACA 1298
| ||| ||||| || || || || || || || || || ||| | ||||| ||
Sbjct 1296 CCGTTGGTTGGGAGAAGGCACTT-CCTACATATACACCAGACTCTCCGGGTGATGCCACC 1354
Query 1299 AGAAACCTCTCCCAACAGTGTCTTAATGCCCTTGC-AAAGGTTCTTCCTGGGTTCCTCGG 1357
|||||||| || || || |||||||| || ||||| |||| | | ||||| || || ||
Sbjct 1355 AGAAACCTGTCTCAGCAATGTCTTAACGCACTTGCGAAAGCTG-TGCCTGGTTTTCTTGG 1413
Query 1358 TGGGAGTGCTGACCTTGCTTCATCCAACATGACATTGCTCAAAATGTTTGGGGACTTCCA 1417
|||||||||||||||||| || |||||||||||| |||| ||| || || |||||||
Sbjct 1414 TGGGAGTGCTGACCTTGCATCTTCCAACATGACAATGCTTAAAGCATTCGGCAACTTCCA 1473
Query 1418 AAAGAACG-CACCTGAAGAGAGAAACCTTAGGTTTGGTGTCAGGGAACACAGCATGGGAG 1476
||| | | |||||||||| ||||||||||| ||||||||||||||||| | |||||||
Sbjct 1474 AAA-AGCCACACCTGAAGAAAGAAACCTTAGATTTGGTGTCAGGGAACATGGTATGGGAG 1532
Query 1477 CTATCTGCAATGGCATTACC-TGTCACAGCCCGGGGCTCATCCCTTACTGTGCTACATTC 1535
|||||||||| |||||| || | ||||||||| || | ||||||||||| || || |||
Sbjct 1533 CTATCTGCAACGGCATTGCCCT-TCACAGCCCCGGTTTTATCCCTTACTGCGCAACTTTC 1591
Query 1536 TTTGTCTTCACAGACTACATGAGAGCTGCCATCAGGCTCTCTGCCCTGTCTCAAGCAGGG 1595
||||| || || ||||| ||||||||||| || || |||| || ||||| |||| ||
Sbjct 1592 TTTGTGTTTACTGACTATATGAGAGCTGCAATGAGAATCTCGGCTTTGTCTGAAGCTGGT 1651
Query 1596 GTTATCTACGTAATGACCCATGATTCAATCGGTCTTGGAGAAGATGGACCGACCCACCAG 1655
||||| ||||| ||||||||||| || || |||||||||||||||||||| ||||||||
Sbjct 1652 GTTATATACGTTATGACCCATGACTCCATTGGTCTTGGAGAAGATGGACCAACCCACCAA 1711
Query 1656 CCTATAGAACA-TGTGGCGAGCTTCCGTGCCATGCCCAACATCT-TGATGCTGAGGCCAG 1713
|| || ||||| | | | || ||||||||||||||||| || | ||||| | | ||||
Sbjct 1712 CCCATCGAACACT-TATCCAGTTTCCGTGCCATGCCCAATAT-TATGATGTTCCGTCCAG 1769
Query 1714 CGGATGG-AACTGAAACTGCGGGGGCATACAAAGTTGCTGT-AGAGAACAGAAAGAGGCC 1771
| ||||| ||| ||||| || || ||||||||| | ||||| | | ||| | |||| ||
Sbjct 1770 CTGATGGGAAC-GAAACAGCCGGTGCATACAAAATCGCTGTCACAAAAC-GTAAGACACC 1827
Query 1772 TTC-GATCCTGGCTCTG-TCCAGACAAAAGCTGCCTCATCTACCTGGAACTTCGGTTGAG 1829
||| | || | || || || ||||||||||||||||| || || ||||| || |||||
Sbjct 1828 TTCTG-TCTTAGC-CTTATCTAGACAAAAGCTGCCTCAACTTCCAGGAACATCTATTGAG 1885
Query 1830 GGAGTGGAGAAGGGGGGATATGTAATCTCAGACAACTCCACAGGTAACAAACCAGACGTA 1889
| || ||||| || ||||| || || |||||||| || ||||||||||| || ||
Sbjct 1886 AGCGTCGAGAAAGGTGGATACACCATTTCTGACAACTCAACCGGTAACAAACCCGATGTG 1945
Query 1890 ATCCTGATGGGGACAGGGTCGGAGCTAGAGATTGCTGCA-AAGGCTGGAGAGAAGCTAAG 1948
||| |||| || || || || ||||||||||||||||| ||| ||| ||||||| ||||
Sbjct 1946 ATCTTGATCGGAACTGGATCAGAGCTAGAGATTGCTGCTCAAG-CTGCAGAGAAGTTAAG 2004
Query 1949 AGAAGAAGG-AAGAGCAGTGAGAGTAGTGTCACTG-GTGA-GTTGGGAGCTGTTT-GATG 2004
||| |||| || || |||||||| || || || || | |||||||||| ||| || |
Sbjct 2005 GGAACAAGGCAAAAGT-GTGAGAGTTGTTTC-CTTTGT-ATGTTGGGAGCT-TTTCGACG 2060
Query 2005 AACAAAGC-GAAGAATACAAAGAAAGTGTGTTACCTTCAGAGGTTTCAGCAAGAGTGAGC 2063
| ||| | || | |||||| |||||||| || || || || || ||||| ||||| ||
Sbjct 2061 AGCAAT-CAGATGCATACAAGGAAAGTGTTTTGCCATCTGATGTATCAGCTAGAGTTAGT 2119
Query 2064 ATTGAAGCAGGGTCGACCTTTGGGTGGGAGAA-GATGGTTGGCTCCAAAGGAAAAGCCAT 2122
|| ||||| || ||||| ||||| |||| ||| ||| || || ||||| ||| | ||
Sbjct 2120 ATCGAAGCTGGATCGACTTTTGGATGGG-GAAAGATCGTCGGAGGAAAAGGGAAATCGAT 2178
Query 2123 CGGTGTAGACA-GTTTTGGAGCAAGTGCACCAGC-GGA 2158
|| | || | |||| ||||||||||||||||| |||
Sbjct 2179 TGGAATTGATACGTTT-GGAGCAAGTGCACCAGCAGGA 2215
> AT4G00114.1 | Symbols: | pseudogene of transketolase | chr4:40862-41383
REVERSE LENGTH=522
Length=522
Score = 749 bits (405), Expect = 0.0
Identities = 468/499 (94%), Gaps = 2/499 (0%)
Strand=Plus/Plus
Query 1728 ACTGCGGGGGCATACAAAGTTGCTGTAGAGAACAGAAAGAGGCCTTCGATCCTGGCTCTG 1787
|||||| | || | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 25 ACTGCGCGTGCCTCCAAAGTTGCTGTAGAGAACAGAAAGAGGCCTTCGATCCTGGCTTTG 84
Query 1788 TCCAGACAAAAGCTGCCTCATCTACCTGGAACTTCGGTTGAGGGAGTGGAGAAGGGGGGA 1847
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||
Sbjct 85 TCCAGACAAAAGCTGCCTCATCTACCTGGAACTTCGGTCGAGGTAGTGGTGAAGGGGGGA 144
Query 1848 TATGTAATCTCAGACAACTCCACAGGTAAC-AAACCAGACGTAATCCTGATGGGGACAGG 1906
||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||
Sbjct 145 TATGTAATCTCAGACAACTCCACAGGTGACAAAACTAGACGTAATCCTAATGGGGACAGG 204
Query 1907 GTCGGAGCTAGAGATTGCTGCAAAGGCTGGAGAGAAGCTAAGAGAAGAAGGAAGAGCAGT 1966
||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 205 GTCGGAGCTAGAGATAGCTGCAAAGGCTGGAGAGAAGCTAAGAGAAGAAAGAAAAGCAGT 264
Query 1967 GAGAGTAGTGTCACTGGTGAGTTGGGAGCTGTTTGATGAACAAAGCGAAGAATACAAAGA 2026
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 265 GAGAGTAGTGTCATTGGTGAGTTGGGAGCTGTTTGATGAACAAAGAGAAGAATACAAAGA 324
Query 2027 AAGTGTGTTACCTTCAGAGGTTTCAGCAAGAGTGAGCATTGAAGCAGGGTCGACCTTTGG 2086
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 325 AAGTGTGTTACCTTGAGAGGTTTCAGCAAGACTGAGCATTGAAGCAGGGTCGACCTTTGG 384
Query 2087 GTGGGAGAAGATGGTTGGCTCCAAAGGAAAAGCCATCGGTGTAGACAGTTTTGGAGCAAG 2146
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 385 GTGGGAGAAGATGGTTGGCTCCAAAAGAAAAGCCATCGGTGTAGACAGTTT-GGAGCAAG 443
Query 2147 TGCACCAGCGGATGTGCTGTACAAGAAATTTGGACTCACGGTTGATGCGGTTGTTGCAGC 2206
||||||||| ||||||| |||| ||||||||||||||| || ||| ||||| |||||||
Sbjct 444 TGCACCAGCCAATGTGCTCTACAGGAAATTTGGACTCACCGTGGATACGGTTATTGCAGC 503
Query 2207 CGCTAAAGACCTTTGCTAA 2225
|||||||||| |||| |||
Sbjct 504 CGCTAAAGACTTTTGTTAA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111395009355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5