BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943753
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00110.1 | Symbols: GAE3 | UDP-D-glucuronate 4-epimerase 3 |... 2169 0.0
AT2G45310.1 | Symbols: GAE4 | UDP-D-glucuronate 4-epimerase 4 |... 640 0.0
AT2G45315.1 | Symbols: | other RNA | chr2:18682108-18683810 RE... 573 1e-162
> AT4G00110.1 | Symbols: GAE3 | UDP-D-glucuronate 4-epimerase 3
| chr4:38504-40189 REVERSE LENGTH=1686
Length=1686
Score = 2169 bits (1174), Expect = 0.0
Identities = 1264/1308 (97%), Gaps = 3/1308 (0%)
Strand=Plus/Plus
Query 21 ATGAAGCAAATGTCGCATCTTGATGATATTCCTTCCACGCCTGGCAAGTTCAAGCCCTAC 80
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 196 ATGAAGCAAATGTCGCATCTTGATGATATTCCTTCGACGCCTGGCAAGTTCAAGCCCTAC 255
Query 81 TTCCACCGTACCCGGTGGCAATCCTCCGTCGCCAAGCTCGCCTTTTGGTCTCTCGTCTTC 140
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TTCCACCGTACGCGGTGGCAATCCTCCGTCGCCAAGCTCGCCTTTTGGTCTCTCGTCTTC 315
Query 141 GTTGGTTTGATCTTCATCTTCTTCTACCGATCTCCTGTTTCCTCCAAT--C-CCGATCCT 197
||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 316 GTTGGTTTGATCTTCATCTTCTTCTACCGATCTCCCGTTTCCTCCAATCCCGCCGATCCT 375
Query 198 TCTCGCCGTTCTCTTCGTACCTACTCTTGGGGAGGACCCGCTTGGGAGAAACGGGTCAGA 257
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 376 TCTCGCCGTTCTCTTCGTACCTACTCCTGGGGTGGACCCGCTTGGGAGAAACGGGTCAGA 435
Query 258 TCCTCCGCCCGTGTCCGTACCCGCCGCGGTTTCTCTGTTCTCGTCACCGGAGCCGCCGGT 317
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TCCTCCGCCCGTCTCCGTACCCGCCGCGGTTTCTCTGTTCTCGTCACCGGAGCCGCCGGT 495
Query 318 TTCGTCGGTACCCATGTCTCCGCCGCTCTTAAACGGCGTGGAGATGGCGTTCTGGGACTG 377
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 496 TTCGTCGGTACCCATGTCTCCGCCGCTCTCAAACGCCGCGGAGATGGCGTTCTGGGGCTT 555
Query 378 GACAACTTCAACGATTACTACGATCCATCGCTAAAGAGAGCAAGGCAAGCCCTTTTGGAG 437
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 556 GACAACTTCAACGATTACTACGATCCATCGCTCAAGAGAGCAAGGCAAGCCCTTTTGGAG 615
Query 438 AGAAGCGGAGTCTTTGTGGTTGAAGGAGACATCAATGACGCTGCTCTCTTGAAGAAGCTC 497
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 AGAAGCGGAGTGTTTGTTGTTGAAGGAGACATCAATGACGCTGCTCTCTTGAAGAAGCTC 675
Query 498 TTTGAAGTTGTCCCCTTTACCCACGTTATGCATTTGGCTGCTCAAGCTGGTGTCAGGTAC 557
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TTTGAAGTTGTTCCCTTTACCCACGTTATGCATTTGGCTGCTCAAGCTGGTGTCAGGTAC 735
Query 558 GCCATGGAAAATCCAAGCTCCTATGTTCACAGTAACATCGCTGGCTTCGTCAATCTCCTT 617
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 736 GCCATGGAAAATCCTAGCTCTTATGTTCACAGTAACATCGCTGGCTTCGTCAATCTCCTT 795
Query 618 GAGGTTTGCAAATCTGCTAATCCCCAACCCGCCATTGTCTGGGCTTCCTCTAGCTCTGTC 677
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GAGGTTTGCAAATCTGCCAATCCCCAACCCGCCATTGTCTGGGCTTCCTCTAGCTCTGTC 855
Query 678 TATGGACTCAACACTAAAGTCCCCTTCTCCGAGAAAGACAGAACTGATCAACCGGCTAGT 737
|| || ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 856 TACGGGCTCAACACTAAGGTCCCCTTCTCCGAGAAAGACAGAACTGACCAACCAGCTAGT 915
Query 738 CTCTATGCTGCTACTAAGAAAGCTGGTGAAGAGATTGCTCACACTTACAATCACATCTAT 797
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 916 CTCTATGCTGCTACTAAGAAGGCTGGTGAAGAGATTGCTCACACTTACAATCACATCTAT 975
Query 798 GGCCTTTCTCTTACTGGCTTGAGGTTTTTCACCGTCTATGGTCCTTGGGGAAGGCCTGAC 857
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GGACTCTCTCTTACTGGCTTGAGGTTTTTCACCGTCTATGGTCCTTGGGGAAGGCCTGAC 1035
Query 858 ATGGCCTATTTCTTCTTCACCAGAGACATTCTCAAAGGGAAAGCCATTTCAATCTTTGAG 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 ATGGCCTATTTCTTCTTCACCAGAGACATTCTCAAAGGGAAAGCCATTTCAATCTTTGAG 1095
Query 918 GGGGTCAACCATGGAACCGTGGCTAGGGACTTCACTTACATTGATGACATTGTCAAGGGC 977
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GGGGTCAACCATGGAACCGTGGCTAGGGACTTCACTTACATTGATGACATTGTCAAGGGG 1155
Query 978 TGCTTGGGGGCTTTGGACACCGCTGAGAAGAGCACAGGTAGTGGTGGTAAGAAGCGCGGT 1037
|| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1156 TGTTTAGGGGCTTTGGACACGGCTGAGAAGAGCACTGGTAGTGGTGGTAAGAAGCGCGGT 1215
Query 1038 GCGGCTCAGTTACGGGTTTTCAATCTCGGCAACACTTCGCCCGTTCCAGTGACTGATCTG 1097
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GCGGCTCAGTTACGGGTTTTCAATCTCGGCAACACTTCGCCCGTTCCAGTGACTGATCTT 1275
Query 1098 GTCACCATTCTCGAGAGACTTCTGAAAGTGAAGGCCAAGAGGAACATTATGAAGTTGCCG 1157
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1276 GTCACCATTCTTGAGAGACTTCTCAAAGTCAAGGCCAAGAGGAACATTATGAAGTTGCCG 1335
Query 1158 AGGAACGGGGATGTGCAGTTCACTCATGCTAATATCAGTTCCGCACAGAGAGAGCTCGGG 1217
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1336 AGGAACGGGGATGTGCAGTTCACTCATGCTAATATCAGTTCTGCGCAGAGAGAGCTCGGC 1395
Query 1218 TACAAACCCACCACCGATCTTCAGACGGGTCTCAAGAAGTTTGCGAGATGGTATTTGGGT 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 TACAAACCCACCACCGATCTTCAGACGGGTCTCAAGAAGTTTGCGAGATGGTATTTGGGT 1455
Query 1278 TACTACAACGGCGGAAAGAAAGCTGCAAGTTGATGATTGACCATCTGC 1325
|||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 1456 TACTACAATGGCGGAAAGAAAGCTGCAAGCTGATGATTGACTATCTGC 1503
> AT2G45310.1 | Symbols: GAE4 | UDP-D-glucuronate 4-epimerase 4
| chr2:18682081-18684042 FORWARD LENGTH=1962
Length=1962
Score = 640 bits (346), Expect = 0.0
Identities = 885/1141 (78%), Gaps = 54/1141 (5%)
Strand=Plus/Plus
Query 190 CCGATCCTTCTCGCCGTTCTCTTCGTACCTACTCTTGGGGAGGACCCGCTTGGGAGAAAC 249
||||||| ||||||||||| || || ||| || | | |||||||| |||||||| ||||
Sbjct 756 CCGATCCATCTCGCCGTTCACTCCGAACCAACACCTACGGAGGACCAGCTTGGGAAAAAC 815
Query 250 GGGTCAGATCCTCCGCCCGTGTCCGTACC-C-GC---C-GCGGTTTCTCTGTTCTCGTCA 303
| |||||||||| || || |||| ||| | | | ||| || | ||| | || |
Sbjct 816 GTCTCAGATCCTCAGCTCGAATCCGAACCTCAACAAACAACGGAATCACAGTTTTAGTAA 875
Query 304 CCGGAGCCGCCGGTTTCGTCGGTACCCATGTCTCCGCCGCTCTT-AAACGGCGTGGAGAT 362
||||||| || ||||||||||| || || ||||||||||| || ||||| || |||||
Sbjct 876 CCGGAGCAGCTGGTTTCGTCGGAACACACGTCTCCGCCGC-ATTAAAACGCCGCGGAGAC 934
Query 363 GGCGTTCTGGGACTGGACAACTTCAACGATTACTACGATCCATCGCT-AAAGAGAGCAAG 421
||||| | || || ||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 935 GGCGTAATCGGCCTCGACAACTTCAACGATTACTACGATCCATCTCTGAAAC-GAGCAAG 993
Query 422 GCAAGCCCTTT--TGGAGAGAAGCGG-AGTCTTTGTGGTTGAAGGAGACATCAATGACG- 477
| ||| ||| | |||||||| || | |||| | || ||||||||||| || ||||
Sbjct 994 ACGAGC--TTTACTCGAGAGAAGTGGGA-TCTTCATCGTAGAAGGAGACATAAACGACGT 1050
Query 478 CTGC-T--CTCTTGAAGAAGCTCTTTGAAGTT-GTCCCCTTTACCCACGTTATGCATTTG 533
| | | ||| | | | ||| || ||| | ||| |||| || ||||||||||||||
Sbjct 1051 C-GAATTACTCC-GTA-A-GCTATTC-AAGATCGTCTCCTTCACACACGTTATGCATTTA 1105
Query 534 GCTGCTCAAGCTGGTGT-CAGGTACGCCATGGAAAATCCAAGCTCCTATGTTCACAGTAA 592
|| |||||||||||||| | ||||||| |||||||| || ||||| || ||||| || ||
Sbjct 1106 GCAGCTCAAGCTGGTGTAC-GGTACGCAATGGAAAACCCTAGCTCGTACGTTCATAGCAA 1164
Query 593 CATCGCTGGCTTCGTCAATCTCCTTGAGGTTTGCAAATCTGCT-AATCCCCAACCCGCCA 651
|||||| || |||||||||||||| ||| | |||||||||| | ||||| ||||| || |
Sbjct 1165 CATCGCCGGATTCGTCAATCTCCTCGAGATCTGCAAATCTG-TGAATCCACAACCTGCTA 1223
Query 652 TTGTCTGGGCTTCCTCTAGCTCTGTCTATGGACTCAACACTAAAGTCCCCTTCTCCGAGA 711
| ||||||||||| |||||||| ||||| ||||||||||| ||||| || ||||| ||||
Sbjct 1224 TAGTCTGGGCTTCGTCTAGCTCCGTCTACGGACTCAACACCAAAGTTCCGTTCTCGGAGA 1283
Query 712 AAGACAGAACTGATCAACCGGCTAGTCTCTATGCTGCTACTAAGAAAGCTGGTGAAGAGA 771
|||| | ||| ||||||||||| ||| | || || || ||||| ||||| || |||||||
Sbjct 1284 AAGATAAAACAGATCAACCGGCGAGTTTATACGCCGCCACTAAAAAAGCCGGCGAAGAGA 1343
Query 772 TTGCTCACACTTACAATCACATCTATGGCCTT-TCTCTTACTGGCTTGAGGTTTTTCACC 830
| || || || ||||| ||||||||||| || ||||| || || || || |||||||||
Sbjct 1344 TCGCACATACCTACAACCACATCTATGGA-TTATCTCTAACCGGATTAAGATTTTTCACC 1402
Query 831 GTCTATGGTCCTTGGGGAAGGCCTGACATGGCCTATTTCTTCTTCACCAGAGACATTCTC 890
|| ||||| ||||||||||| || |||||||| |||||||||||||| | ||| |||||
Sbjct 1403 GTGTATGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACTAAAGATATTCTA 1462
Query 891 AAAGGGAAAGCCATTTCAATCTTTGAGGGGGTC-AACCATGGAACCGTGGCTAGGGACTT 949
||||| ||| | ||||| || || || || | || || ||||| ||||||||||| ||
Sbjct 1463 AAAGGCAAATCGATTTCGATATTCGAATCGG-CGAATCACGGAACGGTGGCTAGGGATTT 1521
Query 950 CACTTACATTGATGACATTGTCAAGGGCTGCTTGGGGGCTTTGGACACCGCTGAGAAGAG 1009
||||||||| || || || || ||||| || || | ||| | || || || ||||||||
Sbjct 1522 CACTTACATAGACGATATAGTGAAGGGATGTTTAGCGGCGCTAGATACGGCGGAGAAGAG 1581
Query 1010 CACAGGTAGTGGTGGTAAGAAGCGCGGTGCGGCTCAGTT-ACGGGT-TTTCAATCTCGGC 1067
||||| ||||| || |||||| | ||| |||| || || | | || ||| || |||||
Sbjct 1582 TACAGGGAGTGGAGGGAAGAAGAGAGGTCCGGCGCAATTGA-GAGTGTTT-AACCTCGGA 1639
Query 1068 AACACTTCGCCCGTTCCAGTGACTGATCTGGTCACCAT-TCTCGAGAGACT-TCTGAAAG 1125
||||| ||||| || || || | |||||||| | || | | ||||||| | ||||||
Sbjct 1640 AACACGTCGCCGGTGCCGGTTTCAGATCTGGTGAGGATAT-TGGAGAGACAAT-TGAAAG 1697
Query 1126 TGAAGGCCAAGAGGAACATT-ATGAAGTTGCCGAGGAA-CGGGGATGTGCAGTTCACTCA 1183
||||||| |||| ||| || || ||| |||| | ||| ||| || || | ||| |||||
Sbjct 1698 TGAAGGCGAAGAAGAAT-TTGATTAAGATGCC-ACGAAACGGTGACGTTCCGTTTACTCA 1755
Query 1184 TGCTAATATCAGTTCCGCACAGA-GAGAGCTCGGGTACAAACCCACCACCGATCTT-CAG 1241
||||||||| |||| || || | | ||||| || || ||||| || || ||| || ||
Sbjct 1756 TGCTAATATTAGTTTAGCTCA-ACGTGAGCTTGGTTATAAACCGACTACGGAT-TTGCAA 1813
Query 1242 ACGGGTCTCAAGAAGTTTG-CGAGATGGTATTTGGGTTACTACAACGGCGG-AAAGAAAG 1299
|| ||| | |||||||||| | |||||||||||| |||| ||| ||||| ||| ||||
Sbjct 1814 ACCGGTTTGAAGAAGTTTGTC-AGATGGTATTTGAGTTATTACTCCGGCGACAAA-AAAG 1871
Query 1300 C 1300
|
Sbjct 1872 C 1872
> AT2G45315.1 | Symbols: | other RNA | chr2:18682108-18683810
REVERSE LENGTH=1448
Length=1448
Score = 573 bits (310), Expect = 1e-162
Identities = 761/976 (78%), Gaps = 42/976 (4%)
Strand=Plus/Minus
Query 190 CCGATCCTTCTCGCCGTTCTCTTCGTACCTACTCTTGGGGAGGACCCGCTTGGGAGAAAC 249
||||||| ||||||||||| || || ||| || | | |||||||| |||||||| ||||
Sbjct 975 CCGATCCATCTCGCCGTTCACTCCGAACCAACACCTACGGAGGACCAGCTTGGGAAAAAC 916
Query 250 GGGTCAGATCCTCCGCCCGTGTCCGTACC-C-GC---C-GCGGTTTCTCTGTTCTCGTCA 303
| |||||||||| || || |||| ||| | | | ||| || | ||| | || |
Sbjct 915 GTCTCAGATCCTCAGCTCGAATCCGAACCTCAACAAACAACGGAATCACAGTTTTAGTAA 856
Query 304 CCGGAGCCGCCGGTTTCGTCGGTACCCATGTCTCCGCCGCTCTT-AAACGGCGTGGAGAT 362
||||||| || ||||||||||| || || ||||||||||| || ||||| || |||||
Sbjct 855 CCGGAGCAGCTGGTTTCGTCGGAACACACGTCTCCGCCGC-ATTAAAACGCCGCGGAGAC 797
Query 363 GGCGTTCTGGGACTGGACAACTTCAACGATTACTACGATCCATCGCT-AAAGAGAGCAAG 421
||||| | || || ||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 796 GGCGTAATCGGCCTCGACAACTTCAACGATTACTACGATCCATCTCTGAAAC-GAGCAAG 738
Query 422 GCAAGCCCTTT--TGGAGAGAAGCGG-AGTCTTTGTGGTTGAAGGAGACATCAATGACG- 477
| ||| ||| | |||||||| || | |||| | || ||||||||||| || ||||
Sbjct 737 ACGAGC--TTTACTCGAGAGAAGTGGGA-TCTTCATCGTAGAAGGAGACATAAACGACGT 681
Query 478 CTGC-T--CTCTTGAAGAAGCTCTTTGAAGTT-GTCCCCTTTACCCACGTTATGCATTTG 533
| | | ||| | | | ||| || ||| | ||| |||| || ||||||||||||||
Sbjct 680 C-GAATTACTCC-GTA-A-GCTATTC-AAGATCGTCTCCTTCACACACGTTATGCATTTA 626
Query 534 GCTGCTCAAGCTGGTGT-CAGGTACGCCATGGAAAATCCAAGCTCCTATGTTCACAGTAA 592
|| |||||||||||||| | ||||||| |||||||| || ||||| || ||||| || ||
Sbjct 625 GCAGCTCAAGCTGGTGTAC-GGTACGCAATGGAAAACCCTAGCTCGTACGTTCATAGCAA 567
Query 593 CATCGCTGGCTTCGTCAATCTCCTTGAGGTTTGCAAATCTGCT-AATCCCCAACCCGCCA 651
|||||| || |||||||||||||| ||| | |||||||||| | ||||| ||||| || |
Sbjct 566 CATCGCCGGATTCGTCAATCTCCTCGAGATCTGCAAATCTG-TGAATCCACAACCTGCTA 508
Query 652 TTGTCTGGGCTTCCTCTAGCTCTGTCTATGGACTCAACACTAAAGTCCCCTTCTCCGAGA 711
| ||||||||||| |||||||| ||||| ||||||||||| ||||| || ||||| ||||
Sbjct 507 TAGTCTGGGCTTCGTCTAGCTCCGTCTACGGACTCAACACCAAAGTTCCGTTCTCGGAGA 448
Query 712 AAGACAGAACTGATCAACCGGCTAGTCTCTATGCTGCTACTAAGAAAGCTGGTGAAGAGA 771
|||| | ||| ||||||||||| ||| | || || || ||||| ||||| || |||||||
Sbjct 447 AAGATAAAACAGATCAACCGGCGAGTTTATACGCCGCCACTAAAAAAGCCGGCGAAGAGA 388
Query 772 TTGCTCACACTTACAATCACATCTATGGCCTT-TCTCTTACTGGCTTGAGGTTTTTCACC 830
| || || || ||||| ||||||||||| || ||||| || || || || |||||||||
Sbjct 387 TCGCACATACCTACAACCACATCTATGGA-TTATCTCTAACCGGATTAAGATTTTTCACC 329
Query 831 GTCTATGGTCCTTGGGGAAGGCCTGACATGGCCTATTTCTTCTTCACCAGAGACATTCTC 890
|| ||||| ||||||||||| || |||||||| |||||||||||||| | ||| |||||
Sbjct 328 GTGTATGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACTAAAGATATTCTA 269
Query 891 AAAGGGAAAGCCATTTCAATCTTTGAGGGGGTC-AACCATGGAACCGTGGCTAGGGACTT 949
||||| ||| | ||||| || || || || | || || ||||| ||||||||||| ||
Sbjct 268 AAAGGCAAATCGATTTCGATATTCGAATCGG-CGAATCACGGAACGGTGGCTAGGGATTT 210
Query 950 CACTTACATTGATGACATTGTCAAGGGCTGCTTGGGGGCTTTGGACACCGCTGAGAAGAG 1009
||||||||| || || || || ||||| || || | ||| | || || || ||||||||
Sbjct 209 CACTTACATAGACGATATAGTGAAGGGATGTTTAGCGGCGCTAGATACGGCGGAGAAGAG 150
Query 1010 CACAGGTAGTGGTGGTAAGAAGCGCGGTGCGGCTCAGTT-ACGGGT-TTTCAATCTCGGC 1067
||||| ||||| || |||||| | ||| |||| || || | | || ||| || |||||
Sbjct 149 TACAGGGAGTGGAGGGAAGAAGAGAGGTCCGGCGCAATTGA-GAGTGTTT-AACCTCGGA 92
Query 1068 AACACTTCGCCCGTTCCAGTGACTGATCTGGTCACCAT-TCTCGAGAGACT-TCTGAAAG 1125
||||| ||||| || || || | |||||||| | || | | ||||||| | ||||||
Sbjct 91 AACACGTCGCCGGTGCCGGTTTCAGATCTGGTGAGGATAT-TGGAGAGACAAT-TGAAAG 34
Query 1126 TGAAGGCCAAGAGGAA 1141
||||||| |||| |||
Sbjct 33 TGAAGGCGAAGAAGAA 18
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65461510680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5