BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943756

Length=197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00090.1 | Symbols:  | Transducin/WD40 repeat-like superfami...   119    1e-26


> AT4G00090.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr4:34091-36880 FORWARD LENGTH=1722
Length=1722

 Score =  119 bits (64),  Expect = 1e-26
 Identities = 70/73 (96%), Gaps = 0/73 (0%)
 Strand=Plus/Minus

Query  1   CGACTGATCAACGATCAAAAATGGTGCAGCGAGCCGTTAATGGCGGTGTTTCTAGAGCTT  60
           ||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||
Sbjct  90  CGACTGATCAACGATGAAAAATGGTGCAGCGAGACGTTAAAGGCGGTGTTTCTAGAGCTT  31

Query  61  AGCTTATGGAGAG  73
           |||||||||||||
Sbjct  30  AGCTTATGGAGAG  18



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8752435074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5