BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943758
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00060.1 | Symbols: MEE44 | Nucleotidyltransferase family pr... 2254 0.0
> AT4G00060.1 | Symbols: MEE44 | Nucleotidyltransferase family
protein | chr4:21437-28871 FORWARD LENGTH=5025
Length=5025
Score = 2254 bits (1220), Expect = 0.0
Identities = 1403/1491 (94%), Gaps = 13/1491 (1%)
Strand=Plus/Plus
Query 21 ATGGAAAATCGCCATCTCCCATCCAAATTCTCCTTCTCTGGC-TCATCCATGGCTCAGAA 79
|||||||||||||||||||| |||||||||| || |||| || |||||||||||||||||
Sbjct 1 ATGGAAAATCGCCATCTCCCTTCCAAATTCTTCTCCTCT-GCTTCATCCATGGCTCAGAA 59
Query 80 TCAACTTATCGATTCCCTCACATCTCACATATCTCTGTACCACTCCCATTCTTCTTCCTC 139
||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||
Sbjct 60 TCAACTTATCGATTCGCTAACATCTCACATATCTCTGTACCACTCCCACTCGTCTTCCTC 119
Query 140 TTCCATGGCTAATACTAGCCCCAATCCTAGGTCGGCGATCCTCCGATGGTTCTCTTCTCT 199
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCAATGGCTAATACTATCCCCAATCCTAGGTCGGCGATCCTCCGATGGTTCTCTTCTCT 179
Query 200 CAGCGTCCACCAGCGCCTCTCTCACCTCACCTTCGTTGATCCCAAGTTCGTCCAAATCCT 259
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 CAGCGTCCACCAGCGCCTCTCTCACCTCACCGTCGTTGATCCCAAGTTCGTCCAAATCCT 239
Query 260 CCTTCAGATGCTTGGTTATATCCGCACCAAAGGCCCTGGCTCTTTCATCATCCTCCCAGA 319
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 240 CCTTCAGATGCTTGGTTATATCCGCACTAAAGGCCCTTGCTCTTTCATCATCCTCCCAGA 299
Query 320 CCTCCC-T--TCCTCCGATCTCCCCAGTCTCTGCTTTAAAAAATCTCGTGGCTTAATCTC 376
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTCCCTTCCTCCTCCGATCTCCCCAGTCTCTGCTTTAAAAAATCTCGTGGCTTAATCTC 359
Query 377 CAGGGTTGCCGAGTCTAACGAGCCAGAGCGTTTCGTTTTCGACTCCACTCGGCTCTTTGG 436
||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 360 CAGGGTTTCCGAGTCCAACGAGTCAGAGCGTTTCGTTTTCGACTCTACTCGGCTCTTTGG 419
Query 437 TTCTAGAGAAGGGGAAAGTGCTCAAGATTGCTCTTGCTCCGTCAATTCCCTCGATTCCGT 496
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TTCTGGAGAAGGGGAAAGGGCTCAAGATTGCTCTTGCTCCGTCAATTCCCTCGATTCTGT 479
Query 497 CGTCATGGCCTATG-ATCTTCTTACGAATGTGGATCGTTTTGTGGAGACTATGGATGCT- 554
|||||||||| | | || ||||||| |||||||||||||| |||||||||||||| | |
Sbjct 480 CGTCATGGCCGAGGAAT-TTCTTACAAATGTGGATCGTTTCGTGGAGACTATGGACG-TC 537
Query 555 TTATCGAATGGAGCATTTTTGAGAGGAGAAGAGAGTGATTTGGGTTCCAATTGGGTAGAA 614
|||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 TTATCGGATGGAGCATTTCTGAGAGGAGAAGAGAGTGATTTGGGGTCCAATTGGGTAGAA 597
Query 615 TTGGAGTGGCTTAAAGCCAAAGGCTATTATAGCATGGAAGCCTTCATTGCTAATAGGTTA 674
|| |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 598 TTAGAGTGGCTCAAAGCCAAAGGCTATTATAGCATGGAAGCCTTCGTTGCAAATAGGTTA 657
Query 675 GAGGTAAGCTTGAGATTAGCTTGGCTGAACACCAATAGTGGCAAGAGAAGAGGAATCAAA 734
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 GAGGTAAGCATGAGATTAGCTTGGCTGAACACAAATAGTGGCAAGAGAAGAGGAATCAAA 717
Query 735 TTGAAAGAGAAATTGAATGCTGCTGCTGCGGCTGCCAATTCGTATTGGAGGAAGAAGGCC 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGAAAGAGAAATTGAATGCTGCTGCTGCGGCTGCCAATTCGTATTGGAGGAAGAAGGCC 777
Query 795 TGTGTTGATTGGTGGCAGAATTTGGATGCCGCAACACACAAGAGAATCTGGACTTGTTTG 854
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 778 TGTGTTGATTGGTGGCAGAATTTGGATGCTGCAACACACAAGAAAATCTGGACTTGTTTG 837
Query 855 TTGGGGAAGTCGGCTAAGTCTGTGATATATGAGATTCTCAGAGAAGCAAATCAAGCACAG 914
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 TTTGGGAAGTCGGCTAAATCTGTGATATATGAGATTCTTAGAGAAGCAAATCAAGCACAG 897
Query 915 CAGGGAGATATGTGGCTCTTCAATTTTGCAAGTGCAAGGAAAAGGCGTACAGACACTTCT 974
||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 898 CAGGGGGAAATGTGGCTCTTCAATTTTGCAAGTGCAAGGAAAGGGCGTACAGACACTTCT 957
Query 975 GCAGTTTCATTCTGTGACATGATTTTGGAACCAAACTCTGTATCAAGGAAACCTGTTACC 1034
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| | |||
Sbjct 958 GCAGTTTCATTCTGTGACATGATTTTGGAACCGAACTCTGTACCAAGGAAACCAATAACC 1017
Query 1035 CTAGCCAGTAATTTAAGTGGCTTATACGTTCTTCAAGAATTTGCTTCGCTGCTCATCTTA 1094
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 GTAGCCAGTAATCTAAGTGGCTTATACGTTCTTCAAGAATTTGCTTCACTGCTCATCTTA 1077
Query 1095 TGCCAAAATGGCTTAGTTCCAGTACAAAGCGTATTTTTCAGCTCATTGGGTACTATCACA 1154
|||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||
Sbjct 1078 TGCCAAAATGGCTTAGTTCCAGTACATAGTGTATTTTTCAGCTCAATGGGTACTATCACA 1137
Query 1155 ACCTTAGTGGATTGCATCTTAAGAAAACTGCGGGGTTTTCTTATGGTAATCTCTATTGAT 1214
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1138 ACCTTAGTGGATTGCATCTTAAGAAAACTACGAGGTTTTCTTATGGTAATCTCTATTGAT 1197
Query 1215 TCCGTTAAA-GTTGAACTTCTTGATGACAACACGCACAAGTGTTCTCCAAGTTCATCATC 1273
|| |||||| || ||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1198 TCTGTTAAAAGT-GAACTTCTTGACGACAACACTCACAAGTGTTCTCCAAGCTCATCATC 1256
Query 1274 CAATCAGAAGCTTTGTTCGACCAGCCGTAAACACAAAGGAAAGACCAGGAACTTGAAAAA 1333
|||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||
Sbjct 1257 AAATCAGAAGCTTGGTTCGACCAACCGTAAACAGAAAGGAAAGACCAGGAACATGAAAAA 1316
Query 1334 GCCTACTCCCGAGGCTACATCTGATAAAAATGTTAATTTGTCCACGAAAAGCGGAAAGAA 1393
||| ||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1317 GCCAACTCCGGAGGCTAAATCTGATAAAAACGTTAATTTGTCCACGAAAAATGGAAAGAA 1376
Query 1394 AGATCAAGCTAAATTGGAATTTAACAAAAACAGAGAAGCGATAGAATGCAAGAAAGTTCC 1453
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1377 AGATCAAGCTAAACTGGAATTTAACAAAAGCAGAGAAGCGATAGAATGCAAGAAAGTTCC 1436
Query 1454 TACAGCTTCAACGAAGATCAGT-AGTCCTGCGGCCTCTGCAGCAACTATGG 1503
||||||||| |||| ||||| | | ||||| ||||||||||||||||||||
Sbjct 1437 TACAGCTTCGACGATGATCAATGA-TCCTGAGGCCTCTGCAGCAACTATGG 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76806833850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5