BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943760
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DN... 1964 0.0
> AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17792-20066 FORWARD LENGTH=1489
Length=1489
Score = 1964 bits (1063), Expect = 0.0
Identities = 1194/1254 (95%), Gaps = 22/1254 (2%)
Strand=Plus/Plus
Query 9 ATACACAGA-TTTAGGATGAGCCAATGTGTTCCAAACTGTCACATCGATGATACTACGGC 67
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 56 ATACACAGATTTTAGGATGAGCCAATGTGTTCCAAACTGTCACATCGATGATACT-C--C 112
Query 68 AGCCGCAGCAGCCACCACCACCGTCCGCTCCATCACAGCAGCGGACATCCCCATATTAGA 127
| |||||||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 113 -G--GCAGCAGCCACCACCACCGTCCGCTCCACCACAGCCGCAGACATCCCCATATTAGA 169
Query 128 CTACGAGGTAGCCGAGCTGACGTGGGAGAACGGGCAACTGGGCTTGCACGGCTTAGGTCC 187
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 170 CTACGAGGTAGCCGAGCTGACGTGGGAGAACGGGCAACTAGGCTTGCACGGCTTAGGTCC 229
Query 188 ACCGCGAGTGACGGCTTCGTCGACCAAGTACTCCACAGGCGCCGGTGGAACGTTGGAGTC 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 ACCGCGAGTGACGGCTTCGTCGACCAAGTACTCCACAGGCGCCGGTGGAACGTTGGAGTC 289
Query 248 GATAGTGGACCAAGCTACTCGCCTCCCTAACCCTAAGCCCACGGATGAGCTCGTCCCGTG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 GATAGTGGACCAAGCTACTCGCCTCCCTAACCCTAAGCCCACGGATGAGCTCGTCCCGTG 349
Query 308 GTTCCACCATCGCTCTTCCAGGGCCGCCATGGCCATGGACGCGCTTGTCCCTTGCTCCAA 367
|||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 350 GTTCCATCATCGCTCCTCCAGGGCCGCGATGGCAATGGACGCGCTTGTCCCTTGCTCCAA 409
Query 368 CCTAGTACAGGAGCAGCAGAGCAAGCCCGGTGGCGTTGGCTCCACCCGGGTGGGGTCATG 427
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 410 CCTAGTACACGAGCAGCAGAGCAAGCCTGGTGGCGTTGGCTCCACCCGGGTGGGGTCATG 469
Query 428 TAGCGATGGTCGTACCATGGCCGGTGGAAAACGAGCCAGAGTGGCGCCGGAGTGGAGCGG 487
|||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct 470 TAGCGATGGTCGTACCATGGGCGGTGGAAAACGAGCAAGAGTGGCACCGGAGTGGAGCGG 529
Query 488 GGGCGGGAGTCAGCGGCTGACCATGGATACTTACGACGTAGGTTTCACCTCAACATCCAT 547
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 530 CGGCGGGAGTCAGCGGCTGACCATGGACACTTACGACGTAGGTTTCACCTCAACATCAAT 589
Query 548 GGGCTCGCATGATAACACCATCGACGATCATGACTCCGTCTGCCACAGCCGCCCACAGAT 607
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GGGCTCGCACGATAACACAATCGACGATCATGACTCCGTCTGCCACAGCCGCCCACAGAT 649
Query 608 GGAGGACGAAGAAGAGAAGAAAGCCGGAGGCAAATCATCAGTTTCAACCAAGAGAAGCAG 667
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 650 GGAGGACGAAGAAGAGAAGAAAGCCGGAGGAAAATCATCAGTTTCAACCAAGAGAAGCAG 709
Query 668 AGCTGCTGCTATTCATAACCAATCCGAACGTAAGAGGAGAGATAAGATCAATCAAAGGAT 727
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 710 AGCTGCTGCTATTCATAACCAATCCGAACGTAAGAGGAGAGATAAAATCAATCAAAGGAT 769
Query 728 GAAGACTTTGCAGAAACTGGTTCCCAATTCCAGCAAGACGGATAAAGCATCTATGTTGGA 787
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GAAGACTTTGCAAAAACTGGTTCCCAATTCCAGCAAGACGGATAAAGCATCTATGTTGGA 829
Query 788 TGAAGTGATAGAGTACTTGAAGCAACTTCAAGCACAAGTGAGCATGATGAGCAGAATGAA 847
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGAAGTGATAGAGTATTTGAAGCAACTTCAAGCACAAGTGAGCATGATGAGCAGAATGAA 889
Query 848 CATGCCTTCCATGATGCTTCCTATGGCCATGCAGCAACAACAACAACAACTACAAATGTC 907
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 890 TATGCCTTCTATGATGCTTCCTATGGCCATGCAGCAACAACAACAAC---TACAAATGTC 946
Query 908 TCTCATGTCCAATCCCATGGGTTTAGGGATTGGCATGGGGATGCCCGGTCTCGGTCTCCT 967
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 947 TCTCATGTCCAATCCCATGGGTTTAGGGATGGGCATGGGGATGCCCGGTCTCGGTCTCCT 1006
Query 968 CGACCTTAATTCTATGAACCGAGCTGCTGCTGCTGCAACCGCTCCTAATATCCATGCCAA 1027
|||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1007 CGACCTTAATTCTATGAACCGAGCTGCTGC------AAGCGCTCCTAATATCCATGCCAA 1060
Query 1028 CGTGATGCCAAACCCATTTGCGCCCATGACTTGTCCATCGTGGGATGCTTCTTCCAACGA 1087
| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct 1061 CATGATGCCAAACCCATTTTTGCCCATGAATTGTCCATCGTGGGATGCTTCTTCCAATGA 1120
Query 1088 CGCTCGATTTCAGTCTCCTCTCATTCCCGATCCTATGTCTGCCTTTCTTGCATGCTCGAC 1147
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1121 CTCTCGATTTCAGTCTCCTCTCATCCCCGATCCTATGTCTGCCTTTCTTGCATGCTCTAC 1180
Query 1148 TCAGCCAACGACGATGGAAGCATATAGCAGGATGGCTGCATTATATCAGCAAATGCAACA 1207
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1181 TCAGCCAACGACGATGGAAGCGTATAGCAGGATGGCTACATTATATCAGCAAATGCAACA 1240
Query 1208 ACAACTTCCTCCT--T-CGAATCCAAAATGATTATT--TGAA-CACGTCTATAT 1255
||||||||||||| | ||||||||||||||||||| | || ||| |||||||
Sbjct 1241 ACAACTTCCTCCTCCTTCGAATCCAAAATGATTATTACTCAAACACCTCTATAT 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61696469805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5