BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943763
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00026.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1415 0.0
> AT4G00026.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro
DOMAIN/s: Mitochondrial inner membrane translocase complex,
subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink). | chr4:11355-13359
REVERSE LENGTH=1163
Length=1163
Score = 1415 bits (766), Expect = 0.0
Identities = 870/919 (95%), Gaps = 11/919 (1%)
Strand=Plus/Plus
Query 16 TCAGAGATGATGATGATGAACCTTCTAAGGAGATCAGCGATGGCCATCGGCCACCAATCA 75
|||||||||||||||||||| ||| |||||||||||||||| |||||||||| |||||||
Sbjct 69 TCAGAGATGATGATGATGAATCTTTTAAGGAGATCAGCGATAGCCATCGGCCGCCAATCA 128
Query 76 AAGTCGAAACTGGCTTCGTTTTCTTCCGCTTCACAACCTTGTTCTGGAATCCCAAAATCG 135
|| ||||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||
Sbjct 129 AAATCGAAACTGGCGTCGTTTTCCTCCGCTACACAACCTTGTTCCGGAATCCCAAAATCG 188
Query 136 TTGATA-AGCG-TTTTACCAAGAGGAGGAGC-ATCAAGGCAGGACTCTACTGGAGCTAAT 192
| | | || | ||||| ||| | | |||| ||||||||||||||||||||
Sbjct 189 TCCA-AGAGGGTTTTTAGCAA-CTCA-TTTCTTTCAA---AGGACTCTACTGGAGCTAAT 242
Query 193 GGACTATTGTTTCGCTTCCGAAACCCGCAAGCAAGTATATGTACGGAAGCTCGTCCAAAG 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GGACTATTGTTTCGCTTCCGAAACCCGCAAGCAAGTATATGTACGGAAGCTCGTCCAAAG 302
Query 253 AACATCAACTCATCTTACTTTACGAGATCTTTTGCATCAAGAACTTCTAAAGAACCTGGG 312
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 303 AACATCAACTCATCTTACTTTACCAGATCTTTTGCATCAAGAACTTCAAAAGAACCTGGG 362
Query 313 AATCAGCAGAATAAGGCTAAGAAAGAGGTGACAACGGTGGAGGATCCTTTTGATTCTCCT 372
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 363 AATCAGCAGAATAAGGCTAAGAAAGAGGTGACGACTGTGGAGGATCCTTTTGATTCTCCT 422
Query 373 ACGTACCACATCCCGGACAAGCCGGTGACCTTTACAGAAGGTGCTTCCTACAGTCTTGTT 432
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 423 ACATACCACATCCCGGAGAAGCCGGTGACCTTTACAGAAGGTGCGTCCTACAGTCTTGTT 482
Query 433 ATTCTGGCTGGGCTTGGGGTCGCTGGAGCTGCTGGGTACGGTGTGTTTAAAGAGCTCATA 492
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 483 ATTCTGGCTGGGCTTGGTGTCGCTGGAGCTGCTGGCTACGGTGTGTTTAAAGAGCTCATT 542
Query 493 TTTCAACCAAAAGAGTACAAGGTCTTTGACAAAGCCTTGAAGAGAATTCAAGATGATGGT 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TTTCAACCAAAAGAGTACAAGGTCTTTGACAAAGCCTTGAAGAGAATTCAAGATGATGGT 602
Query 553 CAGGTGAGGGTTAGGATTGGATCCCCCATCAAAGGCTATGGACAAGAAACCAGAAACCGC 612
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 603 CAGGTGAGGGTTAGGATTGGATCCCCCATCAAAGGCTATGGACAAGAAACTAGAAACCGA 662
Query 613 GCTGCTCGTCAACGTATACCCAATAGAGTATTTACAGATGAAGACGGAGTGGAGCATGTT 672
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 663 GCTGCTCGTCAACGTATACCCAACAGAGTATTTACAGATGAAGACGGAGTGGAGCATGTT 722
Query 673 GAGGTAAACTTCTACATCCGTGGGCCTCAAGGAGCAGGGAAAGTGTACACGGAGATGTTT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GAGGTAAACTTCTACATCCGTGGGCCTCAAGGAGCAGGGAAAGTGTACACGGAGATGTTT 782
Query 733 AAAGACAAGGCAGAGAAGGAATGGAAATACACGTACCTGATCGTAGAGATTTTAACACCT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 AAAGACAAGGCAGAGAAGGAATGGAAATACACGTACCTGATCGTAGAGATTTTAACACCT 842
Query 793 TCCCCAGCCAAATTGATGTTGGAGTCTTACTTGCCTGCCTAAA-CACTCGTATTATATGA 851
|||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |||||
Sbjct 843 TCCCCAGCCAAATTGATGCTGGAGTCTTATTTGCCTGCCTAAAGCACTCGTATT-TATGA 901
Query 852 TTCAGCTGATCCGGAAAACGTTCAGAAACGGCTTAGATTGTTTTAGTTGGGGTGTTGGAG 911
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CTCAGCAGATCCGGAAAACATTCAGAAACGGCTTAGATTGTTTTAGTTGGGGTGTTGGAG 961
Query 912 AAAAGAGAGAGAATTGTGT 930
|||||||||||||||||||
Sbjct 962 AAAAGAGAGAGAATTGTGT 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5