BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943767
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02130.1 | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, ... 676 0.0
> AT1G02130.1 | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A,
RA-5 | RAS 5 | chr1:400035-401882 REVERSE LENGTH=1021
Length=1021
Score = 676 bits (366), Expect = 0.0
Identities = 533/615 (87%), Gaps = 6/615 (1%)
Strand=Plus/Plus
Query 21 ATGAATCCCGAGTATGACTATCTTTTCAAGCTCCTGCTTATCGGAGATTCTGGTGTTGGG 80
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 95 ATGAATCCTGAGTACGACTATCTTTTCAAGCTCCTGCTTATCGGGGATTCTGGCGTAGGC 154
Query 81 AAATCATGTCTACTCTTAAGATT-TGCTGATGATTCGTACATAGAGAGTTACATAAGCAC 139
|| || ||||| || || ||||| | |||||||||| || |||| |||||||| |||||
Sbjct 155 AAGTCTTGTCTTCTTTTGAGATTCT-CTGATGATTCTTATGTAGAAAGTTACATTAGCAC 213
Query 140 TATTGGAGTTGATTTTAAAATTCGGACTGTCGAACAAGATGGGAAGACGGTTAAGCTCCA 199
||||||||| |||||||||||| ||||||| ||||||||||| || || ||||||||||
Sbjct 214 TATTGGAGTCGATTTTAAAATTAGGACTGTGGAACAAGATGGCAAAACAATTAAGCTCCA 273
Query 200 AATTTGGGACACTGCTGGTCAAGAGCGGTTCAGGACAATTACCAGCAGTTACTACCGGGG 259
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 274 AATTTGGGACACTGCTGGTCAAGAACGGTTCAGGACTATTACTAGCAGTTACTACCGTGG 333
Query 260 GGCACATGGAATCATAATTGTTTATGACGTCACAGACGAAGAGAGCTTCAATAACGTGAA 319
|||||||||||| || ||||| || || |||||||| ||||| ||||||||||| || ||
Sbjct 334 GGCACATGGAATTATTATTGTCTACGATGTCACAGATGAAGAAAGCTTCAATAATGTCAA 393
Query 320 GCAGTGGTTGAGTGAAATCGATCGTTATGCGAGTGACAGCGTGAACAAACTC-TTGGTTG 378
||| |||||||||||||| ||||||||||| ||||||| || ||||||||| ||| |||
Sbjct 394 GCAATGGTTGAGTGAAATTGATCGTTATGCTAGTGACAATGTCAACAAACTCCTTG-TTG 452
Query 379 GGAACAAATGTGATCTGGCTGCAAACAGAGC-AGTTCCATATGAAACAGCCAAGGCTTTT 437
| ||||| | |||||| ||| ||||||||| | |||| |||||||| ||||||||||||
Sbjct 453 GAAACAAGTCTGATCTTACTGAAAACAGAGCCA-TTCCTTATGAAACTGCCAAGGCTTTT 511
Query 438 GCGGATGAAATTGGAATTCCTTTTATGGAGACGAGTGCAAAAGATGCCACCAACGTGGAA 497
|| |||||||| || ||||||||||||||||| |||||||||||||| || ||||| |||
Sbjct 512 GCCGATGAAATCGGGATTCCTTTTATGGAGACTAGTGCAAAAGATGCTACAAACGTAGAA 571
Query 498 CAGGCTTTCATGGCCATGGCAGCGTCCATCAAAGACAGAATGGCAAGTCAACCAGCTGCG 557
|||||||||||||| ||| | || ||||||||||| |||||||| || |||||||||| |
Sbjct 572 CAGGCTTTCATGGCAATGTCTGCATCCATCAAAGAGAGAATGGCTAGCCAACCAGCTGGG 631
Query 558 AACAATGCAAGACCGCCAACGGTGCAGATCAGAGGACAGCCAGTTCCCCAGAAGAACGGT 617
|| ||||||||||| || || |||||||||||||||||||| || | |||||||||||
Sbjct 632 AATAATGCAAGACCACCGACCGTGCAGATCAGAGGACAGCCTGTGGCACAGAAGAACGGC 691
Query 618 TGCTGCTCGTCTTGA 632
|||||||| |||||
Sbjct 692 TGCTGCTCAACTTGA 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5