BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943771
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein | chr... 409 8e-114
> AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein | chr1:2412980-2413708
FORWARD LENGTH=729
Length=729
Score = 409 bits (221), Expect = 8e-114
Identities = 256/273 (94%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 13 AGCAAAGCCATGGGGAATATGAACAGCTTCATCAACGACATCTTCGAGAAGCTAGCTCAG 72
|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 307 AGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATATTCGAGAAGCTAGCTCAG 366
Query 73 GAATCTTCGAAACTCGCAAGGTACAACAAGAAGCCGACGATTACATCCCGCGAGATCCAG 132
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 367 GAATCTTCGAAACTCGCTAGGTACAACAAGAAGCCGACCATTACATCTCGCGAGATCCAG 426
Query 133 ACTGCTGTTAGACTAGTCCTCCCCGGTGAACTCGCTAAACACGCCGTCTCTGAAGGTACA 192
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 ACGGCTGTGAGACTCGTCCTCCCCGGTGAACTCGCTAAACACGCCGTCTCTGAAGGTACC 486
Query 193 AAGGCGGTGACCAAGTTTACCAGCTCCTGAAGAGACCCGGTTAGGGTTTTCATGGATTTC 252
|||||||| ||||||||||| ||||| ||||||||||||||||||||||| | |||||||
Sbjct 487 AAGGCGGTTACCAAGTTTACTAGCTCTTGAAGAGACCCGGTTAGGGTTTTTAGGGATTTC 546
Query 253 AATTTCGGTTTGGTTTTTAGTGCTATGTAGGAA 285
||||||||||||||||||||| || ||||||||
Sbjct 547 AATTTCGGTTTGGTTTTTAGTACT-TGTAGGAA 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13119882489
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5