BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943772

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61580.1 | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:2272...   137    3e-32


> AT1G61580.1 | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:22720692-22723152 
REVERSE LENGTH=1354
Length=1354

 Score =  137 bits (74),  Expect = 3e-32
 Identities = 96/107 (90%), Gaps = 0/107 (0%)
 Strand=Plus/Plus

Query  10   AGATAAGGAAAATGAAAGGGCTGAAGCAGAAGAAGGCTCATCTAAATGAGATTCAAATCA  69
            ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct  540  AGATAAGGAAAATGAAAGGGCTGAAGCAGAAGAAGGCACATCTGAATGAGATTCAGATCA  599

Query  70   ATGGCGGAGATGTAGCTAAGAAGGTTGTCTATGCCCACAGTTTCTTT  116
            |||| |||||| |||| ||||| |||| |||||||  |||||| |||
Sbjct  600  ATGGTGGAGATATAGCAAAGAAAGTTGACTATGCCTGCAGTTTATTT  646



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10053549800


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5