BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943791
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38260.1 | Symbols: | Protein of unknown function (DUF833) ... 1376 0.0
> AT4G38260.1 | Symbols: | Protein of unknown function (DUF833)
| chr4:17936921-17938728 REVERSE LENGTH=1502
Length=1502
Score = 1376 bits (745), Expect = 0.0
Identities = 829/869 (95%), Gaps = 8/869 (1%)
Strand=Plus/Plus
Query 1 GTTCGTTGGAGGAGAAGAGAATGTGCATAGCAGTGTTTCTGTGGCAATCGCATCCGCTTT 60
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 499 GTTCGTCGGAGGAGAAGAGAATGTGCATAGCAGTATTTCTGTGGCAATCGCATCCGCTGT 558
Query 61 ACCCTTTTCTTCTATTTCTCAACAGAGATGAATATCACAACAGGGCGACGGAGGCGATGC 120
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 559 ACCCTTTTCTTCTATTTCTCAACAGAGATGAAGATCACAACAGGGCGACAGAGGCGCTGC 618
Query 121 GTTGGTGGGAAGACGGAGAGACGGTGGGAGGAAGAGACCTGGTTGGCGGCGGGACGTGGC 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 619 GTTGGTGGGAAGACGGAGAGACGGTGGGAGGAAGAGACCTTGTTGGCGGCGGGACGTGGC 678
Query 181 TGGGGTGCACGAGGCACGGCCGTCTCGCTTTCCTCACCAATTTCAGGGAAGCCTCCTCCT 240
|||| ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 679 TGGGCTGCACGAGGCATGGCCGTCTGGCTTTCCTCACCAATTTCAAGGAAGCCTCCTCCT 738
Query 241 TCCCTGCTGCTAAATCCCGTGGAGATCTGCCTATTCGTTACTTGCAGAGCCG-AAAGAGT 299
|||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 739 TCCCTGCTGCTAAATCCCGTGGAGATCTGCCTCTTCGTTACTTGCAGAG-CGAAAAGAGT 797
Query 300 CCGGCCGAGTTTGCCGAGGAGATCCAAGACGAAATTTCACTATACAATGGCTTCAACCTG 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 798 CCGGCCGAGTTTGCCGAGGAGATCCAAGACGAAATTTCACTCTACAATGGCTTTAACCTG 857
Query 360 GTTGTCGCTCATGTCTTGTCCAAATCCATGATTTACATTACCAACCGGCCACCCCACGGT 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 858 GTTGTCGCTCATGTCTTGTCCAAATCCATGATTTACATTACCAACCGACCACCCCACGGT 917
Query 420 CACAAGCTCGTGACGCAAGTCTCTCCCGGGATCCATGTCCTTTCCAACGCCAACCTCGAC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GACAAGCTCGTGACGCAAGTCTCTCCCGGGATCCATGTCCTTTCCAACGCCAACCTCGAC 977
Query 480 TCTCCTTGGCCCAAGTGTCTGAGGCTGAGAGAGTGTTTCCAACAGCTTCTGGCTGAGAAC 539
|| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 978 TCCCCTTGGCCCAAGTGTCTGAGGCTGAGGGAGGGTTTCCAACAGCTTCTGGCTGAGAAC 1037
Query 540 GGGAGCCGTGAATTCCCGGTGAAGACCATGGTCGAGGAGGTGATGACCAATACTGTCAAG 599
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1038 GGGAGCGGTGAATTCCCGGTGAAGACCATGGTGGAGGAGGTGATGACCAATACTGTCAAG 1097
Query 600 GACGAAGAAACCGAGCTACCTCACGTTTTCACACCTGAGACGGAATACCATCTCAGCTCC 659
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1098 GACGAAGAAACCGAGCTACCTCACGTTTTCACACCAGAGACGGAATACCATCTCAGCTCC 1157
Query 660 ATCTTCGTCGACATGCAGAGACCAACTGGGCGTTATGGGACCAGAAGCATCTCGGCGATC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1158 ATCTTCGTCGACATGCAGAGACCAACTGGGCGTTATGGGACCAGAAGCATCTCTGCGATC 1217
Query 720 AGCATCAAGTCCCATGGTGATGGTGATGGTGATGGTGAGGTATGCTTCTACGAGAGGCAT 779
| | ||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||
Sbjct 1218 ATCGTCAAGTCCCATGGAGATGGTGGTGGTGATGGTGAGATTTGCTTCTACGAGAGGCAT 1277
Query 780 CTTGAAGAAGGTGATTCATGGAAGGAACACAATCAACAGTTTGTAATAATACAAA----- 834
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1278 CTTGAAGAAGGCGATTCATGGAAGGAACACACTCAACAGTTTGTAATAATACAAAACCAA 1337
Query 835 -GCATTTGATTAGCTAGCCATGCTTATTT 862
||||||||||||||||||| ||||||||
Sbjct 1338 AGCATTTGATTAGCTAGCCAGGCTTATTT 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42045981039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5