BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943792
Length=2087
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38270.1 | Symbols: GAUT3 | galacturonosyltransferase 3 | ch... 3421 0.0
AT4G38260.1 | Symbols: | Protein of unknown function (DUF833) ... 100 5e-20
> AT4G38270.1 | Symbols: GAUT3 | galacturonosyltransferase 3 |
chr4:17938372-17941558 FORWARD LENGTH=2252
Length=2252
Score = 3421 bits (1852), Expect = 0.0
Identities = 2012/2090 (96%), Gaps = 8/2090 (0%)
Strand=Plus/Plus
Query 1 TGTGGTGATATCAGTCAGATCCAGATGACGACGTTCTCGAGAAACGCCGCCTTCTTATCG 60
|||||| ||||||||||||||||||||||||||||||| | | ||||||||| ||||||
Sbjct 38 TGTGGTAATATCAGTCAGATCCAGATGACGACGTTCTCTACATGCGCCGCCTTTTTATCG 97
Query 61 CTGGTAGTGGTGCTACATGCTGTTCATGTCGGTGGAGCCATTTTAGAGTCACAAGCACCC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 CTGGTAGTAGTGCTACATGCTGTTCATGTCGGTGGAGCCATTTTAGAGTCACAAGCACCC 157
Query 121 CACAGAGAACTTAAAGCTTATCGTCCGCTACAAGATAATAATCTAGAGGAGGTGTATGCT 180
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 158 CACAGAGAACTTAAAGCTTATCGTCCGCTGCAAGATAATAATCTACAGGAGGTGTATGCT 217
Query 181 TCCTCAGCTGCTGCAGTGCACTATGATCCAGATCTGAAAGATGTGAACATAGTTGCCACA 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 218 TCCTCAGCTGCTGCAGTGCACTACGATCCAGATCTGAAAGATGTGAACATAGTTGCGACA 277
Query 241 TACAGTGACCATTACGGCAATATACGGCTTGGTAGGGTGAAAATGGGGGATCTTTCAACT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 278 TACAGTGACCATTACGGCAATATACGCCTTGGTAGGGTGAAAATGGGGGATCTTTCACCT 337
Query 301 TCTTGGGTTTTCGAGAATCCTGCCTATCAAGTTAGCGGCAGaaa-aaaaGGTCCGCAGCT 359
||||||||||| |||||||||||||||||||||||| ||| ||| ||||||| |||||||
Sbjct 338 TCTTGGGTTTTGGAGAATCCTGCCTATCAAGTTAGCCGCA-AAACAAAAGGTTCGCAGCT 396
Query 360 AGTTATACCACGGGATTCATTTCAAAATGATACTGGAATCGAAGATAATGCAAGCCGTTC 419
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 397 AGTTATACCACGGGATTCATTTCAAAATGATACTGGAATGGAAGATAATGCAAGCCATTC 456
Query 420 AACAACTAATCAGACTGATGAAAGCGAAAATCAGTTTCCAAACGTGGAATTTGCAAGCCC 479
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 457 TACAACTAATCAGACTGATGAAAGCGAAAATCAGTTTCCAAACGTGGATTTTGCAAGCCC 516
Query 480 AGCAAAACTGAAGCGGCAGATTTTACGTCAGGAGAGGAGAGGTCAACGAACTTTAGAGCT 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 517 AGCAAAACTGAAGCGGCAGATTTTACGTCAGGAAAGGAGAGGTCAACGAACTTTAGAGCT 576
Query 540 GATCCAACAAGAAAAGGAAACTGATGAGCAGATGCAAGAAGCAGCCATTGAGAAGTCAAT 599
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 577 GATCCGACAAGAAAAGGAAACTGATGAGCAGATGCAAGAAGCAGCCATTCAGAAGTCAAT 636
Query 600 GAGCTTTGAAAACTCAGTCATAGGAAAATACAGTATATGGAGGAGAGACTATGAGAGCCC 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 637 GAGCTTTGAAAACTCAGTCATAGGGAAATACAGTATATGGAGGAGAGACTATGAGAGCCC 696
Query 660 AAATGCTGATGCTATCTTGAAGCTTATGAGAGACCAGATCATAATGGCAAAAGCATATGC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 AAATGCTGATGCTATCTTGAAGCTTATGAGAGACCAGATCATAATGGCAAAAGCATATGC 756
Query 720 AAATATTGCCAAATCTCAAAATGTAACCAATCTGTACGTTTTCTTGATGCAGCAGTGTGG 779
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 AAATATTGCCAAATCAAAAAATGTAACCAATCTGTACGTTTTCTTGATGCAGCAGTGTGG 816
Query 780 AGAAAATCAACGTGTTATAGGTAAAGCAACCTCTGATGCCGACCTTCCTTCAAGCGCTCT 839
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 817 AGAAAATAAACGTGTTATAGGTAAAGCAACCTCTGATGCTGACCTTCCTTCAAGCGCTCT 876
Query 840 TGATCAAGCAAAAGCCATGGGCCATGCTCTCTCTCTTGCAAAAGACGAGTTATATGACTG 899
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 877 TGATCAAGCAAAAGCCATGGGCCATGCACTCTCTCTTGCAAAAGACGAGTTATATGACTG 936
Query 900 CCATGAACTTGCAAAAAAGTTCCGGGCCATGCTTCAGTCCACTGAACGCAAAGTAGATGG 959
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 937 CCATGAACTTGCAAAAAAGTTCCGGGCCATCCTTCAGTCCACTGAACGCAAAGTAGATGG 996
Query 960 ACTGAAGAAAAAGGGAACCTTCTTAATTCAGCTAGCTGCCAAAACATTTCCCAAGCCATT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 ACTGAAGAAAAAGGGAACCTTCTTAATTCAGCTAGCTGCCAAAACATTTCCCAAGCCATT 1056
Query 1020 GCATTGCCTGAGTCTGCAGCTAGCGGCAGACTATTTTATTCTAGGTTTCAATGAACAGGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1057 GCATTGCCTGAGTCTGCAGCTAGCGGCAGACTATTTTATTCTAGGTTTCAATGAAGAGGA 1116
Query 1080 TGCAGTGAAAGAGGATGCCAGTCGAAAGAAGTTTGAAGATCCTTCTCTCTATCACTATGC 1139
||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct 1117 TGCAGTGAAAGAGGATGTCAGTCAAAAGAAGCTTGAAGATCCTTCGCTCTATCACTATGC 1176
Query 1140 GATATTTTCAGATAACGTTCTGGCTACATCAGTGGTTGTGAACTCCACTGTCTTGAATGC 1199
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1177 GATCTTTTCGGATAACGTTCTGGCTACATCAGTGGTGGTGAACTCCACTGTCTTGAATGC 1236
Query 1200 AAAGGAACCGCAGAAGCATGTGTTCCATATAGTAACTGACAAATTGAATTTTGCTGCAAT 1259
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1237 AAAGGAACCGCAGAGGCATGTGTTCCATATAGTAACTGACAAACTGAATTTTGGTGCAAT 1296
Query 1260 GAAGATGTGGTTTCGCATCAGTGCTCCTGCTGATGCGACAATTCAAGTTGAAAACATCAA 1319
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||
Sbjct 1297 GAAGATGTGGTTTCGCATCAATGCTCCTGCTGATGCGACGATTCAAGTTGAAAACATAAA 1356
Query 1320 TGATTTCAAGTGGCTGAATTCCTCTTACTGCTCTGTTCTACGACAGCTTGAATCTGCGAG 1379
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1357 TGATTTCAAGTGGCTGAACTCCTCTTACTGCTCTGTTCTACGGCAGCTTGAATCTGCAAG 1416
Query 1380 GCTGAAAGAATACTATTTCAAAGCAAATCATCCTTCATCAATCTCTGCTGGCGCGGACAA 1439
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1417 GCTGAAAGAATACTATTTCAAAGCAAATCATCCTTCATCAATCTCAGCTGGCGCAGATAA 1476
Query 1440 TCTAAAGTACCGCAACCCAAAGTATCTGTCGATGCTGAATCATCTCAGATTCTACCTTCC 1499
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1477 TCTAAAGTACCGCAACCCAAAGTATCTATCGATGCTGAATCATCTCAGATTCTACCTTCC 1536
Query 1500 TGAGGTTTATCCGAAGCTGGAGAAGATCCTGTTTCTGGACGATGACATCGTGGTGCAAAA 1559
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||
Sbjct 1537 TGAGGTTTATCCGAAGCTGGAGAAGATTCTGTTTCTAGACGATGACATTGTGGTGCAGAA 1596
Query 1560 GGACCTGGCACCACTATGGGAAATAGACATGCAAGGAAAAGTGAATGGTGCGGTGGAGAC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 GGACCTGGCACCACTATGGGAAATAGACATGCAAGGAAAAGTGAATGGTGCGGTGGAGAC 1656
Query 1620 GTGCAAGGAGAGCTTCCACAGATTTGACAAGTACCTCAACTTCTCAAATCCAAAGATCTC 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1657 GTGCAAGGAGAGCTTCCACAGATTTGACAAGTACCTCAACTTCTCAAATCCAAAGATTTC 1716
Query 1680 AGAGAATTTCGAGGC-GAGTGCTTGTGGGTGGGCATTTGGGATGAATATGTTTGACCTGA 1738
||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 AGAGAATTTTGACGCTG-GTGCTTGTGGGTGGGCATTTGGGATGAATATGTTTGACCTGA 1775
Query 1739 AAGAGTGGAGGAAACGGAACATTACGGGGATATATCACTATTGGCAAGACATGAATGAAG 1798
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1776 AAGAGTGGAGGAAACGGAACATTACAGGGATATATCACTATTGGCAAGACTTGAATGAAG 1835
Query 1799 ACAGAACACTGTGGAAGCTGGGGTCGTTGCCACCGGGGCTGATAACATTTTACAACCTGA 1858
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1836 ACAGAACACTGTGGAAGCTGGGATCGTTGCCACCGGGGCTGATAACATTTTACAACCTGA 1895
Query 1859 CATATGCAATGGAGAGGAGCTGGCACGTACTGGGGCTGGGATATGACCCAGCGCTAAACC 1918
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1896 CGTATGCAATGGATAGGAGCTGGCACGTACTAGGGCTGGGATATGACCCAGCGCTAAACC 1955
Query 1919 AAACAGCAATAGAGAATGCGGCGGTTGTGCATTACAATGGGAACTACAAGCCATGGCTGG 1978
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1956 AAACAGCAATAGAGAATGCAGCGGTAGTGCATTACAATGGGAACTACAAGCCATGGCTGG 2015
Query 1979 GTTTGGCATTCGCCAAGTACAAACCGTACTGGTCCAAGTACGTTGAGTATGACAACCCTT 2038
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2016 GTTTAGCATTCGCCAAGTACAAACCGTACTGGTCCAAGTACGTTGAGTACGACAACCCTT 2075
Query 2039 ATCTCCGTCGGTGCGACATCAATGAATGAA-GA-GAT-TG-TGGAGGTAG 2084
||||||| |||||||||||||||||||||| || || || |||||||||
Sbjct 2076 ATCTCCGACGGTGCGACATCAATGAATGAATGAAGAGATGGTGGAGGTAG 2125
> AT4G38260.1 | Symbols: | Protein of unknown function (DUF833)
| chr4:17936921-17938728 REVERSE LENGTH=1502
Length=1502
Score = 100 bits (54), Expect = 5e-20
Identities = 56/57 (98%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 63 GGTAGTGGTGCTACATGCTGTTCATGTCGGTGGAGCCATTTTAGAGTCACAAGCACC 119
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GGTAGTAGTGCTACATGCTGTTCATGTCGGTGGAGCCATTTTAGAGTCACAAGCACC 61
Score = 89.8 bits (48), Expect = 1e-16
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 1 TGTGGTGATATCAGTCAGATCCAGATGACGACGTTCTCGAGAAACGCCGCCTTCTTATCG 60
|||||| ||||||||||||||||||||||||||||||| | | ||||||||| ||||||
Sbjct 320 TGTGGTAATATCAGTCAGATCCAGATGACGACGTTCTCTACATGCGCCGCCTTTTTATCG 261
Query 61 CTGGTA 66
||||||
Sbjct 260 CTGGTA 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103463323245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5