BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943798
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38370.1 | Symbols: | Phosphoglycerate mutase family protei... 1155 0.0
> AT4G38370.1 | Symbols: | Phosphoglycerate mutase family protein
| chr4:17969907-17971295 REVERSE LENGTH=956
Length=956
Score = 1155 bits (625), Expect = 0.0
Identities = 681/709 (96%), Gaps = 0/709 (0%)
Strand=Plus/Plus
Query 9 agagagagagagaTGGATTCGTCGTTAGTAGGGAACAACAACAGGTATTGGGTCCTCCGC 68
||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 62 AGAGAGAAAGAGATGGATTCGTCGTCAGTAGGGAACACCAACAGGTACTGGGTCCTCCGC 121
Query 69 CACGGCAAGAGCATTCCCAACGAGAGAGGCCTCGTCGTCTCTTCCATGGAAAATGGTGTC 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CACGGCAAGAGCATTCCCAACGAGAGAGGCCTCGTCGTCTCTTCCATGGAAAATGGTGTC 181
Query 129 CTCCCCGAGTACCAGTTAGCCCCTGATGGTATCACCCAGGCTCGTCTCGCCGGCGAATCG 188
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 182 CTCCCCGAGTACCAGTTAGCCCCTGATGGTGTCGCTCAGGCTCGTCTCGCCGGCGAATCG 241
Query 189 TTCCTCCAGCAACTCAAGGAAAGTAACATAGAGCTGGACAAGGTCCGCATTTGCTACTCC 248
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 242 TTCCTCCAGCAACTCAAGGAAAGTAACATAGAACTGGACAAGGTTCGCATTTGCTACTCC 301
Query 249 CCCTTCTCCAGAACCACTCACACCGCTAGGGTTGTTGCTGAGGTCCTCAACCTCCCATTT 308
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct 302 CCCTTCTCCAGAACCACTCACACCGCTAGGGTTGTTGCTAAGGTCCTCAATCTCCCCTTT 361
Query 309 CATGCTCCTCAATGCAAGATGATGGAAGATCTGCGAGAACGCTATTTTGGACCTACCTTT 368
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 362 GATGCTCCTCAATGCAAGATGATGGAAGATCTGCGCGAACGCTATTTTGGACCTACATTT 421
Query 369 GAACTCAAGTCACATGACAAGTACCCAGAGATATGGGCTCTTGATGGAAAAGATCCTTTC 428
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 422 GAACTCAAGTCCCATGACAAGTACCCAGAGATATGGGCTCTTGATGAAAAAGATCCTTTT 481
Query 429 ATGAGACCACAAGGAGGTGAAAGTGCTGATGATGTTGTTTCCCGACTTGCCACTGCGATG 488
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 482 ATGGGACCAGAAGGAGGTGAAAGTGCTGATGATGTTGTTTCCCGACTTGCCACTGCCATG 541
Query 489 GAATCCATGGAAGCTGAATATCAAAGGTGTGCAATTTTGGTGGTGAGTCATGGAGATCCT 548
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 542 AAATCCATGGAAGCTGAATATCAAAGGTGTGCAATTCTGGTGGTGAGTCATGGAGATCCT 601
Query 549 CTGCAGATGTTGCAGAACGTTTTCCATTCAGCAAAGCTACAGGAAGGAGATGGTTTGGCA 608
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 602 CTGCAGATGTTGCAGAACGTTTTCCATTCAGCAAAGCAACAGGAAGGAGATGGTTTGGCA 661
Query 609 GAGAGGTTTCAGATGAGCAGAGTTGCTTCCGTCTTGTCACAACACCGCAAGTTTGCTTTG 668
|||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 662 GAGAAGTTTCAGTTGAGCAGAGTTGCTTCTGTCTTGTCACAGCACCGCAAGTTTGCTTTG 721
Query 669 CTCACTGGGGAACTCCGACCCCTCATCTGATTGGCAATCAATGTATTCA 717
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CTCACTGGGGAACTCCGACCCCTCATCTGATTGGCAATCAATGTATTCA 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5