BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943806
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38460.1 | Symbols: GGR | geranylgeranyl reductase | chr4:17... 1382 0.0
> AT4G38460.1 | Symbols: GGR | geranylgeranyl reductase | chr4:17994781-17996205
FORWARD LENGTH=1280
Length=1280
Score = 1382 bits (748), Expect = 0.0
Identities = 879/938 (94%), Gaps = 25/938 (3%)
Strand=Plus/Plus
Query 53 TCTTCCTATGAAACTCTCTCCCGCAGCAATTCGATCTTCATCCTC-T-T-CCTCCGGGTC 109
|||||||||||||||||||||||| ||||| |||||||||||||| | | || |||||
Sbjct 134 TCTTCCTATGAAACTCTCTCCCGCTGCAATCCGATCTTCATCCTCATCTGCC-CCGGG-- 190
Query 110 GTCGTCGAATTTCGATCTGAGGACGTATTGGACGACTCTGATCACCGAGATCAACCAGAA 169
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GTCGTTGAACTTCGATCTGAGGACGTATTGGACGACTCTGATCACCGAGATCAACCAGAA 250
Query 170 GCTGGATGAGGCCATACCGGTCAAGCACCCTGCCGGGATCTACGAGGCTATGAGATACTC 229
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 251 GCTGGATGAGGCCATACCGGTCAAGCACCCTGCGGGGATCTACGAGGCTATGAGATACTC 310
Query 230 TGTCCTCGCACAAGGCGCCAAGCGTGCCCCTCCTGTTATGTGTGTGGCGGCCTGCGAGCT 289
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 311 TGTACTCGCACAAGGCGCCAAGCGTGCCCCTCCTGTGATGTGTGTGGCGGCCTGCGAGCT 370
Query 290 CTTCGGTGGCGATCGCCTCGCCGCTTTCCCCACCGCCTGTGCCCTAGAAATGGTCCACGC 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 371 CTTCGGTGGCGATCGCCTCGCCGCTTTCCCCACCGCCTGTGCCCTAGAAATGGTGCACGC 430
Query 350 GGCTTCGCTGATACACGACGACCTCCCCTGTATGGACGACGATCCTGTGCGCAGAGGAAA 409
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GGCTTCGTTGATACACGACGACCTCCCCTGTATGGACGACGATCCTGTGCGCAGAGGAAA 490
Query 410 GCCATCTAACCACACTGTCTACGGCTCTGGCATAGCCCTTCTCGCCGGTGACGCCCTCTT 469
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 491 GCCATCTAACCACACTGTCTACGGCTCTGGCATGGCCATTCTCGCCGGTGACGCCCTCTT 550
Query 470 CCCTCTCGGCTTCCACCACATTGTCTCCCACACGCCCCCTGACCTTGTTCCTCGAGCCAC 529
||| |||| |||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 551 CCCACTCGCCTTCCAGCACATTGTCTCCCACACGCCTCCTGACCTTGTTCCCCGAGCCAC 610
Query 530 CATCCTCAGAGTCATCGCTGAGATTGCCCGCACTGTCGGCTCCACTGGTATGGTTGCAGG 589
|||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 611 CATCCTCAGACTCATCACTGAGATTGCCCGCACTGTCGGCTCCACTGGTATGGCTGCAGG 670
Query 590 CCAGTACG-CGGACCTTGAAGGAGGCCCCTTTCCTCTTTCCTTTGTTCAGGAGAAGAAAT 648
|||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 671 CCAGTACGTCG-ACCTTGAAGGAGGTCCCTTTCCTCTTTCCTTTGTTCAGGAGAAGAAAT 729
Query 649 TCGGAGCCATGGGTGAATGCTCCGCCGTGTGCGGAGGCCTCTTGGGCGGTGCCACTGAGG 708
|||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 730 TCGGAGCCATGGGTGAATGCTCTGCCGTGTGCGGTGGCCTATTGGGCGGTGCCACTGAGG 789
Query 709 ATGAGCTCGAGTGTCTCAGAAGGTACGGGAGAGCCGTCGGGATGCTCTATCAGGTAGTGG 768
|||||||| || ||||| |||||||||||||||||||||||||||| |||||||| || |
Sbjct 790 ATGAGCTCCAGAGTCTCCGAAGGTACGGGAGAGCCGTCGGGATGCTGTATCAGGTGGTCG 849
Query 769 ATGACATCACCGAGGA---GAAGAA---C-A--ATGG---AGCAGGGAAGGCAATG--G- 813
|||||||||||||||| |||||| | | |||| ||||| ||||| |||| |
Sbjct 850 ATGACATCACCGAGGACAAGAAGAAGAGCTATGATGGTGGAGCAGAGAAGGGAATGATGG 909
Query 814 AGATGGCGGAAGAGCTCAAGGAGAAGGCCAAGAAGGAGCTTCAAGTGTTTGACAACAAGT 873
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 910 AAATGGCGGAAGAGCTCAAGGAGAAGGCGAAGAAGGAGCTTCAAGTGTTTGACAACAAGT 969
Query 874 ATGGAGGAGGAGACACGCTTGTTCCTCTCTACACCTTCGTTGACTACGCTGCTCATCGAC 933
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ATGGAGGAGGAGACACACTTGTTCCTCTCTACACCTTCGTTGACTACGCTGCTCATCGAC 1029
Query 934 ATTTTCTTCTTCCCCTCTGAATTTTGGGCCTCTCTTTT 971
|||||||||||||||||||| ||||||||| |||||||
Sbjct 1030 ATTTTCTTCTTCCCCTCTGA-TTTTGGGCC-CTCTTTT 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5