BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943817
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38550.1 | Symbols: | Arabidopsis phospholipase-like protei... 2865 0.0
AT4G38552.1 | Symbols: | Potential natural antisense gene, loc... 1122 0.0
> AT4G38550.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) family | chr4:18025635-18028800 FORWARD LENGTH=2251
Length=2251
Score = 2865 bits (1551), Expect = 0.0
Identities = 1765/1867 (95%), Gaps = 19/1867 (1%)
Strand=Plus/Plus
Query 11 CTCCACCCAACATGGACTTCTTCACTTCAAGCAAAGCTAAGAAAGATGGCAAAAGATCAT 70
||| |||||| |||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 148 CTCAACCCAATATGGACTTCTTCACTTCAAGCAAAGCTAAGAAAGATAGCAAAAAATCAT 207
Query 71 CAGGACTCTTTGGCAAGAAAACTGTCAGCAAGAGCACTCCGGGCAGCCCTGCTCATCCCT 130
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CAGGACTCTTTGGCAAGAAAACTGTCAGCAAGAGCACTCCGGGCAGCCCTGCTCATCCCC 267
Query 131 CCGGTGCTAGATCCCCGCCACCATCGTATCTCTCCAACAAAAGAGCCGAAACAGAGTACG 190
|||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 268 CCGGCGCTAGATCCCCGCCCCCATCGTATCTTTCAAACAAAAGAGCCGAAACAGAGTACG 327
Query 191 ATTTCCCCACCTCCGATGAACAAAGACCCTACTGGAAACAGCCTGCCTCTGAACGCGTCC 250
||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 328 ATTTCCCCATGTCCAATGAACAAAGACCATACTGGAAACAGCCTGCCTCTGAACGCGTCC 387
Query 251 CCAACTCCCACCCTAGGCCTCCCGTGTATGGATACGGCACGCCCGAGCGTCGTCGAGACC 310
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 388 CCAACTCCCACCCTAGGCCTCCCGTGTATGGATACGGCACGCCCGACCATCGTCGAGACC 447
Query 311 ACGGTAGAGACAGAATGGACGCGATGAGTTATGAGCCAGAGACCAACGCTCCTTCCAGCC 370
|||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 448 ACGGTAGAGAAAGAATGGAGGCCATGAGTTATGAGCCAGAGACCAACGCTCCTTCCAGCC 507
Query 371 CATTTCATCCAGCTGGAAACCGCACGCCTGAACGTCCTAGGAGATCAACCGAGTATCGTC 430
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 508 CATATCATCCAGCTGGAAACCGCACGCCTGAACGTCCTAGGAAATCAACCGAGTATCGTC 567
Query 431 GAGAACACCAGGATCGAATGTATGAAGCAGATACCCGAAGCAATGCAAGCCCATTTCACC 490
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 568 GAGAACACCAGGATCGAATGTATGAAGCAGATACCCGAAGCAATGCGAGCCCATTTCACC 627
Query 491 CATTCAGAAGCCCTTCTCCATCTCCATACCAAACGCCTGATCGCCGCAGAGACCACGATA 550
||||||||||||||||||||||||||| ||| ||||||||||| | | | | |
Sbjct 628 CATTCAGAAGCCCTTCTCCATCTCCATTCCACACGCCTGATCG-C-C---G----C---A 675
Query 551 GAGACCACTACGACGCAATGTACGAACCTGAGGCCAACACTTTGCTGCAGAATAGCGCTC 610
||||||||||||| | ||||| || |||||||||||||| ||||||||||||||||||
Sbjct 676 GAGACCACTACGA--C-ATGTATGAGCCTGAGGCCAACACCATGCTGCAGAATAGCGCTC 732
Query 611 CGGGGAGCCCATTTCATCCAGCTGGAAGCCGCTCTCCACCGTCATACAGAACGCCTGATC 670
| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 733 CAGGGAGCCCATTCCATCCAGCTGGAAGCCGCTCTCCACCACCATACAGAACGCCTGATC 792
Query 671 GCCGTAGTAATC-ATGGTAAAGAGCAATATGAGGACCTGTACGACCAAGATGGTGATGTT 729
| |||||||| | ||| ||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 793 GTCGTAGTAA-CTATGATAAAGAGCAATTTGAGGACCTGTACGAGCAAGATGGTGATGTC 851
Query 730 ACACCGCGAAACAGCTCTCCACCGAGCCCGTTTCATCCAGCAGCATACAAAACGTCTGAT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 ACACCGCGAAACAGCTCTCCACCGAGCCCGTTTCATCCAGCAGCATACAAAACGTCTGAT 911
Query 790 CAACGTAGTAACCATGGTAAAGAGCAAATTGAGGACTTTTATGAGCCAGATGATGATGTA 849
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 912 CAACGTAGTAACCATGGTAAAGAGCAAATTGAGGACTTTTATGAGCAAGATGACGATGTA 971
Query 850 ACACCGCGAAACAGCTCTCCACCTAGCCCATTGCATCCAGCAGCAAGCCGTTCACCACCA 909
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 972 ACACCACGAAACAGCTCTCCACCTAGCCCATTGCATCCAGCAGCAAGCCATTCACCACCA 1031
Query 910 CCACCACAACCATACAGAACGCCTGACCGTCGTAGAAGTCACCAGGATAATGAGGAATTC 969
|||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||
Sbjct 1032 CCACCACAACCATACAGAACGCCTGACCATCGTAGAAGCCACCAGGATAACGAGGATTTC 1091
Query 970 GAGGCAATGTATGAGCTAGATGGCGACGTAATAC-CGCAGAACAGCGCTCCTCCGAGTCC 1028
||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||
Sbjct 1092 GAGGCAATGTATGAGCTAGATGGCGACTTAATACAC-CAGAAGAGCGCTCCTCCGAGTCC 1150
Query 1029 AGTTCGTGGACCATACTATTCATCCAGCGACGACGATAACCACTCCACCTACCTCTATCC 1088
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1151 CGTTCATGGACCATACTATTCATCCAGCGACGACGATAATCACTCCACCTACCTCTATCC 1210
Query 1089 AGAAATCCGTAGCCCACTACGTTCCAGGCTCGTATCAGAGAACAGCACGCCGGTGCACCA 1148
||||||||| |||||||| ||||||||| ||||||| |||||||||||||| || |||||
Sbjct 1211 AGAAATCCGCAGCCCACTTCGTTCCAGGATCGTATCCGAGAACAGCACGCCTGTTCACCA 1270
Query 1149 CAACTACCAGATAGTTGCGGCCGAAAGCTATGAGCAAGACAAGCAGTTCGAGCCGCCGGA 1208
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1271 CAACTACCAGATAGTTGCGGCCGAGACCTATGAGCAAGACAAGCAGTTCGAGCCGCCGGA 1330
Query 1209 GCTGCCTGACGAGTCACAGAGCTTCACAATGCAAGAGATTACCAAAATGCGAGGACTCAA 1268
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1331 GCTGCCTGACGAGTCACAAAGCTTCACAATGCAGGAGATTACCAAAATGCGAGGACTCAA 1390
Query 1269 GAACTACGAAAGCGGCAAGGAAGAGAATCAATCAATGATATCCGAGGCTTACGTATCCGT 1328
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1391 GAACTACGAAAGCGGCAAGGAAGAGAGTCAATCAATGATATCCGAGGCTTACGTATCCGT 1450
Query 1329 CGCGAACTATAGAGTGAGGCAGAGCGTGTCGGAAACCCTGCAGGCGATCATCGACAAGCA 1388
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CGCGAATTACAGAGTGAGGCAGAGCGTGTCGGAAACCCTGCAGGCGATCATCGACAAGCA 1510
Query 1389 CGGAGACATCGCCGCCACCTCGAAGCTGCAAGCAATGGCAACTCGGTCGTATTACCTGGA 1448
||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1511 CGGCGACATCGCAGCCTCCTCGAAGCTGCAAGCAATGGCAACTCGGTCTTATTACCTGGA 1570
Query 1449 ATCCCTAGCCGCGGTGGTGATGGAGCTGAAGAAGACGGTTCTGAGGGATCTGACGAAAAC 1508
|||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1571 ATCCCTAGCCGCTGTGGTGATGGAGCTGAAAAAGACGGTTCTGAGGGATTTGACGAAAAC 1630
Query 1509 GCGCGTGGCGGAGATGGCGGCGGTGGTGAAAGACATGGAGTCGGTGAAAATCAACGTGTC 1568
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 GCGCGTGGCGGAGATCGCGGCGGTGGTGAAAGACATGGAGTCGGTGAAAATCAACGTGTC 1690
Query 1569 GTGGCTGAAGACAGCGGTGGCGGAGCTGGCGGAGGCAGTGGAGTACTTCGGGCAGTACGA 1628
|||||| ||||||||||| |||| ||||||||||| |||||||| ||||||||||||||
Sbjct 1691 GTGGCTAAAGACAGCGGTAACGGAACTGGCGGAGGCGGTGGAGTATTTCGGGCAGTACGA 1750
Query 1629 CACGGCGAAGGTGGAGAAAGAGGTGTGCGAGAGAGATCTGACGGCGAAGAAGGGGGAGAT 1688
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1751 CACGGCGAAGGTGGAGAAAGAGGTGTGCGAGAGAGATCTGACGGCGAAAAAGGGGGAGAT 1810
Query 1689 GGAGGAGATGACGGCGGAGCTGGTGAAGAGGGAGAAGGAAATCAAAGAATGCAGAGAGAA 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 GGAGGAGATGACGGCGGAGCTGGTGAAGAGGGAGAAGGAAATCAAAGAATGCAGAGAGAA 1870
Query 1749 GGTGACGGTGGTGGCGGGGAGGCTAGGGCAGCTGGAGATGAAAGGTTCGAAATTGAACAA 1808
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 GGTGACGGTGGTCGCAGGGAGGCTAGGGCAGCTGGAGATGAAAGGTTCGAAATTGAACAA 1930
Query 1809 GAATCTCGACCTCTTTCAATCCAAAGTCCACAAATTCCAAGGACAAGCCGTCCTTCTCCA 1868
||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1931 GAATCTCGACCTCTTCCAGTCCAAAGTCCACAAATTCCAAGGAGAAGCCGTCCTTCTCCA 1990
Query 1869 CGTTTAG 1875
| |||||
Sbjct 1991 CCTTTAG 1997
> AT4G38552.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT4G38550 | chr4:18025620-18028492 REVERSE
LENGTH=2771
Length=2771
Score = 1122 bits (607), Expect = 0.0
Identities = 662/689 (96%), Gaps = 1/689 (0%)
Strand=Plus/Minus
Query 1133 GCACGCCGGTGCACCACAACTACCAGATAGTTGCGGCCGAAAGCTATGAGCAAGACAAGC 1192
||| ||| || ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 688 GCA-GCCTGTTCACCACAACTACCAGATAGTTGCGGCCGAGACCTATGAGCAAGACAAGC 630
Query 1193 AGTTCGAGCCGCCGGAGCTGCCTGACGAGTCACAGAGCTTCACAATGCAAGAGATTACCA 1252
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 629 AGTTCGAGCCGCCGGAGCTGCCTGACGAGTCACAAAGCTTCACAATGCAGGAGATTACCA 570
Query 1253 AAATGCGAGGACTCAAGAACTACGAAAGCGGCAAGGAAGAGAATCAATCAATGATATCCG 1312
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 569 AAATGCGAGGACTCAAGAACTACGAAAGCGGCAAGGAAGAGAGTCAATCAATGATATCCG 510
Query 1313 AGGCTTACGTATCCGTCGCGAACTATAGAGTGAGGCAGAGCGTGTCGGAAACCCTGCAGG 1372
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 509 AGGCTTACGTATCCGTCGCGAATTACAGAGTGAGGCAGAGCGTGTCGGAAACCCTGCAGG 450
Query 1373 CGATCATCGACAAGCACGGAGACATCGCCGCCACCTCGAAGCTGCAAGCAATGGCAACTC 1432
||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 449 CGATCATCGACAAGCACGGCGACATCGCAGCCTCCTCGAAGCTGCAAGCAATGGCAACTC 390
Query 1433 GGTCGTATTACCTGGAATCCCTAGCCGCGGTGGTGATGGAGCTGAAGAAGACGGTTCTGA 1492
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 389 GGTCTTATTACCTGGAATCCCTAGCCGCTGTGGTGATGGAGCTGAAAAAGACGGTTCTGA 330
Query 1493 GGGATCTGACGAAAACGCGCGTGGCGGAGATGGCGGCGGTGGTGAAAGACATGGAGTCGG 1552
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 329 GGGATTTGACGAAAACGCGCGTGGCGGAGATCGCGGCGGTGGTGAAAGACATGGAGTCGG 270
Query 1553 TGAAAATCAACGTGTCGTGGCTGAAGACAGCGGTGGCGGAGCTGGCGGAGGCAGTGGAGT 1612
|||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||
Sbjct 269 TGAAAATCAACGTGTCGTGGCTAAAGACAGCGGTAACGGAACTGGCGGAGGCGGTGGAGT 210
Query 1613 ACTTCGGGCAGTACGACACGGCGAAGGTGGAGAAAGAGGTGTGCGAGAGAGATCTGACGG 1672
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 ATTTCGGGCAGTACGACACGGCGAAGGTGGAGAAAGAGGTGTGCGAGAGAGATCTGACGG 150
Query 1673 CGAAGAAGGGGGAGATGGAGGAGATGACGGCGGAGCTGGTGAAGAGGGAGAAGGAAATCA 1732
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGAAAAAGGGGGAGATGGAGGAGATGACGGCGGAGCTGGTGAAGAGGGAGAAGGAAATCA 90
Query 1733 AAGAATGCAGAGAGAAGGTGACGGTGGTGGCGGGGAGGCTAGGGCAGCTGGAGATGAAAG 1792
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 89 AAGAATGCAGAGAGAAGGTGACGGTGGTCGCAGGGAGGCTAGGGCAGCTGGAGATGAAAG 30
Query 1793 GTTCGAAATTGAACAAGAATCTCGACCTC 1821
|||||||||||||||||||||||||||||
Sbjct 29 GTTCGAAATTGAACAAGAATCTCGACCTC 1
Score = 361 bits (195), Expect = 2e-98
Identities = 213/222 (96%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 70 TCAGGACTCTTTGGCAAGAAAACTGTCAGCAAGAGCACTCCGGGCAGCCCTGCTCATCCC 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2313 TCAGGACTCTTTGGCAAGAAAACTGTCAGCAAGAGCACTCCGGGCAGCCCTGCTCATCCC 2254
Query 130 TCCGGTGCTAGATCCCCGCCACCATCGTATCTCTCCAACAAAAGAGCCGAAACAGAGTAC 189
|||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 2253 CCCGGCGCTAGATCCCCGCCCCCATCGTATCTTTCAAACAAAAGAGCCGAAACAGAGTAC 2194
Query 190 GATTTCCCCACCTCCGATGAACAAAGACCCTACTGGAAACAGCCTGCCTCTGAACGCGTC 249
|||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2193 GATTTCCCCATGTCCAATGAACAAAGACCATACTGGAAACAGCCTGCCTCTGAACGCGTC 2134
Query 250 CCCAACTCCCACCCTAGGCCTCCCGTGTATGGATACGGCACG 291
||||||||||||||||||||||||||||||||||||||||||
Sbjct 2133 CCCAACTCCCACCCTAGGCCTCCCGTGTATGGATACGGCACG 2092
Score = 302 bits (163), Expect = 1e-80
Identities = 194/209 (93%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 930 GCCTGACCGTCGTAGAAGTCACCAGGATAATGAGGAATTCGAGGCAATGTATGAGCTAGA 989
|||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 992 GCCTGACCATCGTAGAAGCCACCAGGATAACGAGGATTTCGAGGCAATGTATGAGCTAGA 933
Query 990 TGGCGACGTAATAC-CGCAGAACAGCGCTCCTCCGAGTCCAGTTCGTGGACCATACTATT 1048
||||||| |||||| | ||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 932 TGGCGACTTAATACAC-CAGAAGAGCGCTCCTCCGAGTCCCGTTCATGGACCATACTATT 874
Query 1049 CATCCAGCGACGACGATAACCACTCCACCTACCTCTATCCAGAAATCCGTAGCCCACTAC 1108
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 873 CATCCAGCGACGACGATAATCACTCCACCTACCTCTATCCAGAAATCCGCAGCCCACTTC 814
Query 1109 GTTCCAGGCTCGTATCAGAGAACAGCACG 1137
|||||||| ||||||| ||||||||||||
Sbjct 813 GTTCCAGGATCGTATCCGAGAACAGCACG 785
Score = 252 bits (136), Expect = 1e-65
Identities = 144/148 (97%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 783 GTCTGATCAACGTAGTAACCATGGTAAAGAGCAAATTGAGGACTTTTATGAGCCAGATGA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1255 GTCTGATCAACGTAGTAACCATGGTAAAGAGCAAATTGAGGACTTTTATGAGCAAGATGA 1196
Query 843 TGATGTAACACCGCGAAACAGCTCTCCACCTAGCCCATTGCATCCAGCAGCAAGCCGTTC 902
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1195 CGATGTAACACCACGAAACAGCTCTCCACCTAGCCCATTGCATCCAGCAGCAAGCCATTC 1136
Query 903 ACCACCACCACCACAACCATACAGAACG 930
||||||||||||||||||||||||||||
Sbjct 1135 ACCACCACCACCACAACCATACAGAACG 1108
Score = 224 bits (121), Expect = 2e-57
Identities = 134/140 (96%), Gaps = 2/140 (1%)
Strand=Plus/Minus
Query 387 AAACC-GCACGCCTGAACGTCCTAGGAGATCAACCGAGTATCGTCGAGAACACCAGGATC 445
||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1812 AAACCTGCA-GCCTGAACGTCCTAGGAAATCAACCGAGTATCGTCGAGAACACCAGGATC 1754
Query 446 GAATGTATGAAGCAGATACCCGAAGCAATGCAAGCCCATTTCACCCATTCAGAAGCCCTT 505
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1753 GAATGTATGAAGCAGATACCCGAAGCAATGCGAGCCCATTTCACCCATTCAGAAGCCCTT 1694
Query 506 CTCCATCTCCATACCAAACG 525
|||||||||||| ||| |||
Sbjct 1693 CTCCATCTCCATTCCACACG 1674
Score = 185 bits (100), Expect = 1e-45
Identities = 115/122 (94%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 663 GCCTGATCGCCGTAGTAATC-ATGGTAAAGAGCAATATGAGGACCTGTACGACCAAGATG 721
||||||||| |||||||| | ||| ||||||||||| ||||||||||||||| |||||||
Sbjct 1486 GCCTGATCGTCGTAGTAA-CTATGATAAAGAGCAATTTGAGGACCTGTACGAGCAAGATG 1428
Query 722 GTGATGTTACACCGCGAAACAGCTCTCCACCGAGCCCGTTTCATCCAGCAGCATACAAAA 781
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 GTGATGTCACACCGCGAAACAGCTCTCCACCGAGCCCGTTTCATCCAGCAGCATACAAAA 1368
Query 782 CG 783
||
Sbjct 1367 CG 1366
Score = 163 bits (88), Expect = 5e-39
Identities = 103/110 (94%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 287 GCACGCCCGAGCGTCGTCGAGACCACGGTAGAGACAGAATGGACGCGATGAGTTATGAGC 346
||| |||||| | ||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1991 GCA-GCCCGACCATCGTCGAGACCACGGTAGAGAAAGAATGGAGGCCATGAGTTATGAGC 1933
Query 347 CAGAGACCAACGCTCCTTCCAGCCCATTTCATCCAGCTGGAAACCGCACG 396
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1932 CAGAGACCAACGCTCCTTCCAGCCCATATCATCCAGCTGGAAACCGCACG 1883
Score = 97.1 bits (52), Expect = 5e-19
Identities = 60/64 (94%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 11 CTCCACCCAACATGGACTTCTTCACTTCAAGCAAAGCTAAGAAAGATGGCAAAAGATCAT 70
||| |||||| |||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 2516 CTCAACCCAATATGGACTTCTTCACTTCAAGCAAAGCTAAGAAAGATAGCAAAAAATCAT 2457
Query 71 CAGG 74
||||
Sbjct 2456 CAGG 2453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93824818605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5