BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943821
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18... 963 0.0
> AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18036116-18040928
FORWARD LENGTH=3159
Length=3159
Score = 963 bits (521), Expect = 0.0
Identities = 689/764 (90%), Gaps = 36/764 (5%)
Strand=Plus/Plus
Query 21 ATGAAGTCAAGAACACGATACTTGATAGCGATTCTACTTGTAGTTTCGCTCTGTTCCAAG 80
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGAAGTCGAGAACACGATACTTGATAGCGATTCTACTTGTAATTTCGCTCTGTTCCAAG 60
Query 81 GCAAGCCATGGCCATGGGGGAGGAGAAGTTGATGATGACAATGATGAGAAAAAGAAGAAA 140
||||| || ||||| | || ||||| | || || || | ||| || | | | |
Sbjct 61 GCAAG-CA--GCCAT-GATGATGAGAA---AAAGAAGA-AA-G--GAGTAACATACG--A 107
Query 141 GGAGTAACATACGA-CGGAACTTCGTTGATCATAAATGGAAAAAGAGAGCTTCTTTTCTC 199
| || | | || ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 108 CG-GT-TC-T--GAGCGGAACTTCATTGATCATAAATGGAAAAAGAGAGCTTCTTTTCTC 162
Query 200 TGTTTCTGTTCATTACCCTCGAAGCACA---C-C-T--G-ACATGTGGCCCAGTATCATT 251
|| ||||||||||||||||||||||||| | | | | ||||||||||||||||||||
Sbjct 163 TGGTTCTGTTCATTACCCTCGAAGCACACCTCACGTAAGCACATGTGGCCCAGTATCATT 222
Query 252 GACAAAGCTAGAATTGGGGGACTTAACACCATCCAAACTTATGTTTTCTGGAATGTGCAT 311
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 223 GACAAAGCTAGAATTGGGGGACTTAACACCATCCAAACTTATGTTTTCTGGAATGTCCAT 282
Query 312 GAGCCTGAACATCGCAAGTATGATTTCAAGGGGAGATTTGACTTGGTGACATTCATCAAA 371
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 283 GAGCCTGAACAAGGCAAGTATGATTTCAAGGGGAGATTTGACTTGGTGAAATTCATCAAA 342
Query 372 CTAATCCAGGAGAAAGGTCTCTATGTCACTCTCAGACTCGGACCCTTTATCCAAGCCGAA 431
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CTAATCCACGAGAAAGGTCTCTATGTCACTCTCAGACTCGGACCCTTTATCCAAGCCGAA 402
Query 432 TGGAACCACGGAGGGTTGCCTTACTGGCTACGCGAGGTCCCAGAGGTTTACTTTCGTACA 491
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 403 TGGAACCACGGAGGGTTGCCGTACTGGCTACGCGAGGTCCCAGATGTTTACTTCCGTACA 462
Query 492 GATAATGAACCTTTCAAGGAACACACAGAGAGATATGTGAGGAAAATACTTGGAATGATG 551
||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 463 AATAATGAACCTTTTAAGGAACATACAGAGAGATATGTGAGGAAAATACTTGGGATGATG 522
Query 552 AAAGAAGAGAAGCT-TCTATCTTCACAAAGGAGGTCCCATCATCTTGGGACAGA--GA-A 607
|| ||||||||||| | | |||||||| ||||||||||||||||||||||||| || |
Sbjct 523 AAGGAAGAGAAGCTGT-TCGCTTCACAA-GGAGGTCCCATCATCTTGGGACAGATAGAGA 580
Query 608 -TGAGTGCAACGCGGTTCAGCTAGCCTACAAGGAGAATGGTGAGA-GATATATAAAATGG 665
||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||||||
Sbjct 581 ATGAGTACAACGCGGTTCAGCTAGCCTACAAGGAGAATGGAGAGAAG-TATATAAAATGG 639
Query 666 GCAGCGAATTTGGTAGAGTCAATGAAACTGGGAATCCCCTGGGTAATGTGCAAACAAAAC 725
||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 640 GCAGCAAATTTGGTGGAGTCAATGAATCTGGGAATCCCCTGGGTTATGTGCAAACAAAAC 699
Query 726 AATGCTCCTGGCAATCTTATTAATGCTTGTAATGGAAGGCATTG 769
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 700 GATGCTCCTGGCAATCTGATTAATGCTTGTAATGGAAGGCATTG 743
Score = 667 bits (361), Expect = 0.0
Identities = 464/510 (91%), Gaps = 21/510 (4%)
Strand=Plus/Plus
Query 887 GTACCATATACCAAGATCATTCATGAAGGAGGAGAAGAAGAAGAACATGTTGGTGATTCT 946
|||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2034 GTACCATATACCGAGATCTTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCT 2093
Query 947 AGAGGAAGAACCAGGGGTGAAGTCAGAGGCTATTGACTTCGTGTTGGTGAATAGAGACAC 1006
|||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct 2094 CGAGGAAGAACCAGGGGTGAAGTTAGAGTCTATTGATTTCGTGTTGGTGAATAGAGACAC 2153
Query 1007 AATCTGAAGTTATGTCGGGGAGGATTACCCAGTATCGGTGAAATCGTGGAAGAGAGAAGG 1066
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 AATCTGTAGTAATGTCGGGGAGGATTACCCAGTATCGGTGAAATCGTGGAAGAGAGAAGG 2213
Query 1067 GCCAAAGATAGCTTCGAGAAGCAAAGATATGAGGCTAAAGGCAGTGATGAAGTGTCCACC 1126
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2214 GCCAAAGATAGTTTCGAGAAGCAAAGATATGAGGCTAAAGGCAGTGATGAGGTGTCCACC 2273
Query 1127 GGAGAAACAAATGGTGGCGGTAGAATTTGCAAGCTTCGGAGATCCGACAGGAACTTGTGG 1186
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 2274 GGAGAAACAAATGGTGGAAGTACAATTTGCAAGCTTCGGAGATCCGACAGGAACTTGTGG 2333
Query 1187 GAACTTCACAATAGGGAAGTGCTCTGCATCTAAGTCAAAAGAGGTGGTGGAGAAGGACAG 1246
||||||||||| |||||||||||||||||||||||||| |||||||| | |
Sbjct 2334 TAACTTCACAATGGGGAAGTGCTCTGCATCTAAGTCAAAGGAGGTGGT---------C-G 2383
Query 1247 GACTCCTGTTACAGGAGTGTTTGGGGAAGAATCATTGTTCGATAGTAGTAGCGAGAGAGA 1306
| | | ||||||||||||| | |||| ||||||| |||||||||||||| ||||
Sbjct 2384 -A-----G--A-AGGAGTGTTTGGGTAGGAATTATTGTTCCATAGTAGTAGCGAGGGAGA 2434
Query 1307 CTTTTGGGGACAAAGGGTGTCCGGAGATAGTGAAGACATTGGCAGTGCA-GATCAAGTGT 1365
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2435 CTTTTGGGGACAAAGGGTGTCCGGAGATAGTGAAGACATTGGCAGTGCAAG-TCAAGTGT 2493
Query 1366 GAGAAGAAAGAAGGAGAACTAGATGAGAAG 1395
||||||||||||||| ||| ||||||||||
Sbjct 2494 GAGAAGAAAGAAGGAAAACAAGATGAGAAG 2523
Score = 169 bits (91), Expect = 8e-41
Identities = 102/107 (95%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 769 GTTTCGAGTTTTTGGGGATCCTCCAACTCATAGAACAGTCAGAAGATATTGCATTCTCGG 828
||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| |
Sbjct 813 GTTTCGAGTTTTTGGGGATCCTCCAACACAGAGAACAGTC-GAAGATATTGCATTCTCAG 871
Query 829 TCGCTAGATACTTCTCTAAGAACGGATCTCATGTCAACTACTACATG 875
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 872 TCGCTAGATACTTCTCTAAGAACGGATCCCATGTCAACTACTACATG 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68724546105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5