BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943822
Length=2461
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03430.1 | Symbols: STA1, EMB2770 | pre-mRNA splicing factor... 845 0.0
AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18... 329 6e-89
> AT4G03430.1 | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-related
| chr4:1517134-1520563 REVERSE LENGTH=3430
Length=3430
Score = 845 bits (457), Expect = 0.0
Identities = 839/1016 (83%), Gaps = 55/1016 (5%)
Strand=Plus/Plus
Query 494 AGACATCGAGAATTACAGAGCCTCCAACCCTAAAG-TTTCTGAGCAGTTTGTGGATCTGA 552
||| |||||||| ||| ||||||| |||||| ||| || |||||||||||| |||| |||
Sbjct 732 AGAAATCGAGAAATACCGAGCCTCGAACCCT-AAGATTACTGAGCAGTTTGCGGATTTGA 790
Query 553 AGA-GAAAGTTGCATACTTTGTCTGAGGATGAATGGGATAGTATTCCAGAGATTGGGAAT 611
||| |||| || || |||||||||| |||||| |||||||||||||| ||||||||| ||
Sbjct 791 AGAGGAAA-TTACACACTTTGTCTGCGGATGAGTGGGATAGTATTCCTGAGATTGGGGAT 849
Query 612 TACTCGCAT-CGGAGCAAGAAGAAGAGGTTTGAGAGCTTTGTGCCTGTTCCTGACACGCT 670
||||||| | ||| ||||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 850 TACTCGC-TGAGGAACAAGAAGAAGAAGTTTGAGAGCTTTGTGCCTATTCCTGATACGCT 908
Query 671 TTT---GCA-G-GAA-AAAG----GGA--TCGTC-TCGGCCTTAGGCCCAAATAGCAGAG 717
||| | | | ||| |||| ||| | ||| | |||||||| |||||| |||||||
Sbjct 909 TTTGGAGAAGGCGAAGAAAGAAAAGGAGCTTGTCAT-GGCCTTAGACCCAAAGAGCAGAG 967
Query 718 CCGCTGGTGGATCGGAGACGCCAT----G--GA------T---AGACTTGACTTCAGTCG 762
|||||||||| |||||||| |||| | || | |||||||||| | ||||
Sbjct 968 CCGCTGGTGGGTCGGAGACACCATGGGGGCAGACGCCGGTGACAGACTTGACTGCTGTCG 1027
Query 763 GTGAGGGAAGAGGTTTTCTGTTGTCTCTGAAGCTTGAGAGGTTATCAGATTCTCTTTCAG 822
|||||||||||||| ||||||||||||||||||| | |||||||||| |||| |
Sbjct 1028 GTGAGGGAAGAGGTACGGTGTTGTCTCTGAAGCTTGATAACCTATCAGATTCAGTTTCGG 1087
Query 823 GGCAAACTGTTGTGGATCCTAAAGGCTACTTAACTGACCTTAAGAATAAGGAACTCACCA 882
|||||||||| ||||||||||||||||||||||||||||| |||| || | || |||
Sbjct 1088 GGCAAACTGTAGTGGATCCTAAAGGCTACTTAACTGACCTGAAGAGTATGAAAAGAACC- 1146
Query 883 AC-GATGCAGACATTTTTC-ATATTAATAGAGCTAGACCCTTATTA-AAGAGTATTACAC 939
|| |||| ||| | | | | || |||||||||||| ||| || |||||| | || |
Sbjct 1147 ACTGATGAAGAGA-TATACGATCGCAATAGAGCTAGATTGTTA-TACAAGAGTCTGACCC 1204
Query 940 AGTCGAATCCCAAGAATCCCAATGGCTGGATTGCTGCTGCGAGACTCGAGGAGAG-GGCT 998
|||||||||| |||||||| |||||||||||||||||||| ||| | |||||| | || |
Sbjct 1205 AGTCGAATCCAAAGAATCCAAATGGCTGGATTGCTGCTGCTAGAGTGGAGGAG-GTGGAT 1263
Query 999 GGTAAAATAAAAGCCGCTAGAACTCAGATTCAGAAGGGATGC-AATGAGTGCCC-AAAAC 1056
|| || || ||||| ||||| ||||||||||| ||| ||| || |||||||| ||||
Sbjct 1264 GGGAAGATTAAAGCAGCTAGGTTTCAGATTCAGAGGGGCTGCGAA-GAGTGCCCGAAAA- 1321
Query 1057 ATGAGGATGTTTGGGTTGAGGCTTGTATGCTGGCCACA-CCGGAGGATGCCAAGGCGGTG 1115
|||||||||||||| |||| ||||||| | | || | | || || |||||||||| |||
Sbjct 1322 ATGAGGATGTTTGGCTTGAAGCTTGTAGGTTAGCTA-ATCCAGAAGATGCCAAGGGGGTT 1380
Query 1116 ATTGC-AATGGGAGTTAAGCAAATACCCAATTCAGTGAAGCTATGGTTGGAGGCTGCAAA 1174
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1381 ATTGCGAA-GGGAGTTAAGCTGATACCCAATTCAGTGAAGCTATGGTTGGAGGCTGCAAA 1439
Query 1175 GCTGGAGCATGATGAGGATAACAAGAGTAGGGTGTTGAGAAAAGGACTGGAGCATATTCC 1234
|||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1440 GCTGGAGCATGATGTGGAGAACAAGAGTAGGGTGTTGAGAAAGGGACTGGAACATATTCC 1499
Query 1235 AGACTCGGTTAGGCTATGGAAGACTGTTAAGGACATGGCTAATAAAGAAGATGCAGTGG- 1293
|||||| || || ||||||||| ||||| || |||||||| | || |||||| ||
Sbjct 1500 AGACTCTGTAAGACTATGGAAGGCTGTTGTTGAGTTGGCTAATGAGGAGGATGCAA-GGA 1558
Query 1294 TTTTGCTTCACAGAGCTGTGGAATGCTGCCCTTTGCATCCAGAGCTATGGATGGCGCTTG 1353
||||||||||||| |||||||| |||||||||||||||| ||||||||| |||| ||||
Sbjct 1559 TTTTGCTTCACAGGGCTGTGGAGTGCTGCCCTTTGCATCTGGAGCTATGGGTGGCACTTG 1618
Query 1354 CGAGGCTTGAAACATACGAA-AACACAAAGAAAGTGTTGAACAGAGCGAGAGAGAAGCTC 1412
||||||| |||||||| | || ||||||| |||||||||| ||||||||||||||||
Sbjct 1619 CGAGGCTCGAAACATATGCTGAAT-CAAAGAAGGTGTTGAACAAAGCGAGAGAGAAGCTC 1677
Query 1413 CCCAAGGAGCGTGGGATTTGGATCACCGCTGCTAAGCTAGAGGAAGATAATGGGAA 1468
|| ||||||| || ||||||||||||||||||||| |||| |||| |||||||||
Sbjct 1678 CCAAAGGAGCCTGCAATTTGGATCACCGCTGCTAAGTTAGAAGAAGCTAATGGGAA 1733
Score = 375 bits (203), Expect = 8e-103
Identities = 278/315 (88%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 1668 GAGAAGAGTCATGGTAGTATGGAGTCTCTTGATGCCGTGTTGCGTAAGGCTGTGACATAC 1727
|||||||| ||||| ||| |||||| ||||||||| |||||||||||||||| |||||
Sbjct 2068 GAGAAGAGCCATGGGAGTCGGGAGTCCCTTGATGCCTTGTTGCGTAAGGCTGTAACATAT 2127
Query 1728 CTCCCTCAGGCTGAGGTTCTCTGGCTCATGTGTGCCAAAGAGAAGTGGCTCGCTGGAGAT 1787
|||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2128 GTCCCGCAAGCTGAGGTTCTCTGGCTCATGGGTGCCAAAGAGAAGTGGCTCGCTGGAGAT 2187
Query 1788 GTTCCAGCAGCCCGTGGC-ATTCTACAAGAGGCTCATGCCGCAGTTCCAAACTCCGAGGA 1846
|||||||||||||||| | ||||||||||||||| |||| ||| |||| ||||| |||||
Sbjct 2188 GTTCCAGCAGCCCGTG-CTATTCTACAAGAGGCTTATGCTGCAATTCCCAACTCTGAGGA 2246
Query 1847 AATCTGGCTTGCTGCTTTTAAGCTAGAGTTTGAGAGCAGGGAGGTGGAGAGGGCGAGGAT 1906
|||||||||||||||||| ||||| |||||||||| || |||| ||||||||| || ||
Sbjct 2247 AATCTGGCTTGCTGCTTTCAAGCTTGAGTTTGAGAACAAGGAGCCGGAGAGGGCAAGAAT 2306
Query 1907 GATTCTCGCAAAAGCAAGGGAAAGAGGAACTACTGGGAGGGTGTGGATGAAATCAGCCAT 1966
| | || ||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 2307 GCTGCTTGCAAAAGCAAGGGAAAGAGGAGGGACTGAAAGGGTCTGGATGAAATCAGCCAT 2366
Query 1967 TGTTGAGAGGGAACT 1981
||||||||| |||||
Sbjct 2367 TGTTGAGAGAGAACT 2381
Score = 156 bits (84), Expect = 1e-36
Identities = 130/153 (85%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 23 GATGGTGTTCCTCTCGATTCCAAACGTGAAGACCATGTCGATCAATGTGAACCCTAGTGC 82
||||||||| |||||||||||||||| |||||| | |||||| | |||||||||| | |
Sbjct 63 GATGGTGTTTCTCTCGATTCCAAACGGGAAGACTTTATCGATCGACGTGAACCCTAATTC 122
Query 83 AACCACCATCTCCGCCTTCGAACAATTGGTCCATCAACGCACTCATCTTCCTCAACCTCT 142
||||||||||||||||||||||||||||| ||| ||||| | | || |||| ||| || |
Sbjct 123 AACCACCATCTCCGCCTTCGAACAATTGGCCCACCAACGTAGTGATGTTCCACAATCTTT 182
Query 143 CCTTCGTTACTCGCTCTGTCTCCGCAACCCTAG 175
|||||||||||| ||| || | || ||||||||
Sbjct 183 CCTTCGTTACTCTCTCCGTATGCGAAACCCTAG 215
> AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18036116-18040928
FORWARD LENGTH=3159
Length=3159
Score = 329 bits (178), Expect = 6e-89
Identities = 267/306 (87%), Gaps = 21/306 (7%)
Strand=Plus/Plus
Query 186 TCCGATCCTGCCCTGTTATCGGATCTAGGTTTTGGCCCTTTGTCTACGGTACTTGTTCAT 245
|||||| |||||||| | ||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 2650 TCCGATTCTGCCCTGGTGTCGGATCTAGGTTTTGGCCCTTTCTCTACGGTAGTTGTTAAT 2709
Query 246 GTCCCTCTAATCGGTGGAGCGGCTCCGCCTCAGCCCCTCTTCAATT-----C-------A 293
||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 2710 GTCCCTCTAATCGGTGGAGCGGCTCCGCCTCAGCCCCGCTTCAATTTAATGCCTCCGTCA 2769
Query 294 AACTATGTCGCTGGTTTGGGTCGTGGGGCTACAGGGTTTACTACCCGCTCCGATATTGGT 353
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2770 AACTATGTCGCTGGTTTGGGTCGTGGGGCTGCAGGGTTTACTACCCGCTCCGATATTGGT 2829
Query 354 CCTGCTCGTGCTGATGGCGATG-A--CG-TGA----A-TCACAAGTTTGATGACTTTGAA 404
|||||||||||| ||||||||| | || ||| | ||||||||||||||| ||||||
Sbjct 2830 CCTGCTCGTGCTAATGGCGATGGAAACGCTGACGTGAATCACAAGTTTGATGATTTTGAA 2889
Query 405 GGGAATGATGCGGGATTGTTCGCTAATGCCGAGTGTGATGACGGAGACACAGAGGCTGAC 464
||| ||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 2890 GGGCATGATGCCGGATTGTTCGCTAATGCCGAGAGTGATGACCAAGACAAAGAGGCTGAT 2949
Query 465 GCCATT 470
|| |||
Sbjct 2950 GCTATT 2955
Score = 213 bits (115), Expect = 7e-54
Identities = 123/127 (97%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 494 AGACATCGAGAATTACAGAGCCTCCAACCCTAAAGTTTCTGAGCAGTTTGTGGATCTGAA 553
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 3021 AGAAATCGAGAATTACAGAGCCTCCAACCCTAAAGTTTCTGGGCAGTTTGTGGATTTGAC 3080
Query 554 GAGAAAGTTGCATACTTTGTCTGAGGATGAATGGGATAGTATTCCAGAGATTGGGAATTA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3081 GAGAAAGTTGCATACTTTGTCTGAGGATGAATGGGATAGTATTCCAGAGATTGGGAATTA 3140
Query 614 CTCGCAT 620
|||||||
Sbjct 3141 CTCGCAT 3147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122106339262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5