BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943828
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38660.1 | Symbols: | Pathogenesis-related thaumatin superf... 1631 0.0
AT1G75800.1 | Symbols: | Pathogenesis-related thaumatin superf... 78.7 1e-13
> AT4G38660.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr4:18066177-18068205 REVERSE LENGTH=1530
Length=1530
Score = 1631 bits (883), Expect = 0.0
Identities = 1010/1071 (94%), Gaps = 9/1071 (1%)
Strand=Plus/Plus
Query 14 aaaaaaCCCATAATGGATCTTTCTTCTCGTCGCGCCTCTTCCACTCTCACATTGAGCTTC 73
||| || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 AAAGAA-CCATGATGAATCTTTCTTCTCGTCGCGCCTCTTCCACTCTCACATTGAGCTTC 272
Query 74 A-TAGTTCTCCTCCTAGCTTCCACAGGTTCGTATGGCTCAACATTTACATTCGCTAATCG 132
| | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 273 ACT-GTTCTCCTTTTAGCTTCCACAGGTTCGTATGGCTCAACATTCACATTCGCTAATCG 331
Query 133 CTGCGGCTTCACCGTATGGCCTGGAATCCTAGCGAATGCTGGCTCACCTACTCTCTCCAC 192
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 332 GTGCGGCTACACCGTATGGCCTGGAATCCTATCGAATGCTGGCTCACCTACTCTCTCCAC 391
Query 193 CACCGG-TTTCGAGCTCCCTAAAGGCACCTCCCGCTCTCTCCAAGCTCCCACCGGTTGGT 251
|||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 392 CACCGGATTT-GAGCTCCCTAAAGGCACCTCTCGCTCTCTCCAAGCTCCCACCGGTTGGT 450
Query 252 CCGGTCGATTCTGGGCTCGAACCGGTTGCAAGTTCGACGGTTCTGGCTCCGGTACATGCA 311
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 451 CCGGTCGATTCTGGGCTCGTACCGGTTGCAAGTTCGACAGTTCTGGCTCCGGTACATGCA 510
Query 312 CAACCGGTGATTGCGGCTCCAACACTATCGAATGCGCCGGACTTGGCGCCGCACCGCCTG 371
||||||||| |||||||||||| || ||||||||||||| ||||| |||||||||||||
Sbjct 511 AAACCGGTGACTGCGGCTCCAACGCTGTCGAATGCGCCGGGCTTGGTGCCGCACCGCCTG 570
Query 372 TAACTCTCGCCGAGTTCACTCTAGGCACTGGCGGCGACGATTTCTACGACGTTAGTCTCG 431
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 571 TAACTCTCGCGGAGTTCACTCTAGGCACTGGCGGCGATGATTTCTACGACGTTAGTCTCG 630
Query 432 TCGACGGTTACAACATACCGATGATAGTTGAAGTCGCCGGTGGATCTGGGCAGTGCGCTT 491
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TCGACGGTTACAACATTCCGATGATAGTTGAAGTCGCCGGTGGATCTGGGCAGTGCGCTT 690
Query 492 CTACCGGATGCACTTCGGATCTTAACACTCAGTGCCCTGCTGAGCTGCGTTTCGGCGACG 551
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 691 CTACCGGATGCACTACGGATCTTAACATTCAGTGCCCTGCTGAGCTGCGTTTCGGCGACG 750
Query 552 GAGACGCTTGTAAAAGCGCGTGTGAAGCGTTTCGAAGTCCTGAGTATTGTTGCAGCGGCG 611
|||||||||| |||||||||||| ||||||||| |||||||| || |||||||||||||
Sbjct 751 GAGACGCTTGCAAAAGCGCGTGTTTAGCGTTTCGGAGTCCTGAATACTGTTGCAGCGGCG 810
Query 612 CGTACGCTACACCTTCTACTTGTCGGCCTTCCGTCTACTCGGAGATGTTCAAAGCCGCGT 671
|||| ||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||
Sbjct 811 CGTATGCTACACCTTCTAGTTGTCGGCCTTCCGTGTATTCGGAGATGTTTAAAGCCGCGT 870
Query 672 GTCCTCGCTCGTATAGCTACGCTTACGACGATGCTACGAGCACTTTCACTTGCGCCGGTG 731
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 GTCCTCGCTCCTATAGCTACGCTTACGACGATGCTACGAGCACTTTCACTTGCGCCGGTG 930
Query 732 GAGATTATACGGTGACGTTTTGCCCTTCTTCCCCTAGTCAAAAATCGACTAGCTACTCCC 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GAGATTATACGGTGACGTTTTGCCCTTCTTCCCCTAGTCAAAAATCGACTAGCTACTCCC 990
Query 792 CTCCAGTGACAGACTCGTCGACGACCTCACAAGGTTCGGATCCTGTGCCTGGTTCTGATA 851
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 991 CTCCAGTGACAGACTCGTCGTCGACCTCACAAGGTTCCGATCCTGTGCCTGGTTCTGATA 1050
Query 852 CGGGTTATGCCGCCGGTCAGGGTCAACAGACTCCAGTTCAAGGTAATGTGTACGGGTCTC 911
| ||||| | || |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1051 CTGGTTA--C-GCTGGTCAGGGTCAACAGACTCCAGGTCAAGGTAATGTGTACGGGTCAC 1107
Query 912 AGGGTACTGGGTCGGAGATGGGTACGGGTGAGACCATGTTACAGGACGGATCATGGATGG 971
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1108 AGGGGACTGGGTCGGAGATGGGTACGGGTGAGACCATGTTACAAGACGGATCATGGATGG 1167
Query 972 CTGGTTTGGCCATGGGAGACTCAAGCAGACCAGCCGGCGCTTCATTGGCAATGCTACTTG 1031
||||||||||||||||||| |||||||||||||||||| ||||||| || |||| ||||
Sbjct 1168 CTGGTTTGGCCATGGGAGAGGCAAGCAGACCAGCCGGCGTTTCATTGACAGTGCTGCTTG 1227
Query 1032 CTGCGTTTACTTTTCCGTTTATCTTCTCGTAGCATCCTCGTCTT-AGATTT 1081
|||| ||||||||||||||||| ||||||||||||| ||||||| ||||||
Sbjct 1228 CTGCATTTACTTTTCCGTTTATTTTCTCGTAGCATCATCGTCTTTAGATTT 1278
> AT1G75800.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:28458782-28460854 FORWARD LENGTH=1507
Length=1507
Score = 78.7 bits (42), Expect = 1e-13
Identities = 116/151 (77%), Gaps = 7/151 (5%)
Strand=Plus/Plus
Query 314 ACCGGTGATTGCGGCTCCAACACTATCGAATGCGCCGGACT-TGGCGCCGCACCGCCTGT 372
||||| |||||||| || || |||||||| ||||| | || || |||| || |
Sbjct 378 ACCGGAGATTGCGGATCTGGTACCCTCGAATGCTCCGGA-TCCGGAGCAACACCACCAGC 436
Query 373 AACTCTCGCCGAGTTCACTCTAG--GCA-CTGGCGG-CGACGATTTCTACGACGTTAGTC 428
||| || || || ||||| |||| | | || ||| | ||||||||||||||||||||
Sbjct 437 AACACTAGCGGAATTCACACTAGACGGATCTAACGGAC-TCGATTTCTACGACGTTAGTC 495
Query 429 TCGTCGACGGTTACAACATACCGATGATAGT 459
||||||||||||||||| | |||||| ||||
Sbjct 496 TCGTCGACGGTTACAACGTCCCGATGCTAGT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5