BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943829
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38670.1 | Symbols: | Pathogenesis-related thaumatin superf... 1365 0.0
> AT4G38670.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr4:18069601-18071355 REVERSE LENGTH=1229
Length=1229
Score = 1365 bits (739), Expect = 0.0
Identities = 833/880 (95%), Gaps = 0/880 (0%)
Strand=Plus/Plus
Query 1 TCGAATCCTCTTGTAACAACAATGATGAATCGAATCCTCTTGTTTATGATCCTGGCTTTT 60
|||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 108 TCGAATCCTCCTGTAACAGCAATGATGAATCGGATCCTCTTGTTTATGATCCTGGCTTTT 167
Query 61 GTCTTATCTCTTTCAGAAGTTGAGCCGATTTCGTTCAAGATCACGAATCGTTGCCGGAAC 120
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 168 GTCTCATCTCTTTCAGAAGTTGAGCCAATTTCGTTCAAGATCACGAATCGTTGCCGGAAC 227
Query 121 ACGACATGGCCTGGTTTGCTCTCCGGTGCTAACTCCGCGCCGCTCCCCACAACTGGCTTT 180
|||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 228 ACGATATGGCCCGGTTTGCTCTCTGGTGCTAACTCAGCGCCGCTCCCCACAACTGGCTTT 287
Query 181 CGTCTTTCCAGAGGAAAATCTAAAATCGTCGCAATACCAGCGTCCTGGTCCGGTCGTCTC 240
||||| || |||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 288 CGTCTCTCTAGAGGAAAATCTAAAACCGTCGCAATACCAGAGTCGTGGTCCGGTCGTCTC 347
Query 241 TGGGCACGAACCTTGTGTTCACAAGATCGGAGCTCCGGTTCTTTCGTCTGCTTAACCGGA 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 348 TGGGCACGAACCTTGTGTTCACAAGATCGGAGTTCCGGTTCTTTCGTCTGCTTAACCGGA 407
Query 301 GACTGTGGCTCAGGAAAAGTCGAATGTACAGGCTCCGGTGCTAAACCTCCAGCAACCCTC 360
|| || ||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 408 GATTGCGGCTCGGGAAAAGTCGAATGTTCAGGCTCCGGAGCTAAACCTCCAGCAACTCTC 467
Query 361 GCCGAGTTTACTCTCAACGGTACCGGAGGACTTGACTTCTACGACGTTAGCCTCGTCGAC 420
|||||||||||||||||||| || |||||||| || || |||||||||||||||||||||
Sbjct 468 GCCGAGTTTACTCTCAACGGCACAGGAGGACTAGATTTTTACGACGTTAGCCTCGTCGAC 527
Query 421 GGTTACAACCTCCCGATGCTAATCTTGCCCAAGAAAATCGTCTTTGGAGGATGCGGAGCC 480
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 528 GGTTACAATCTCCCGATGCTAATCTTGCCCAAGAAAATCGTCATTGGAGGATGCGGAGCC 587
Query 481 ACCGGGTGTCTCGTGGACTTGAACGGCGCGTGTCCCAGAGACCTAAAGCTGGTGGCGCGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 588 ACCGGGTGTCTCGTGGACTTGAACGGCGCGTGTCCCAGAGACCTAAAGCTGGTGACGCGT 647
Query 541 GGGAAAGGGAACGGTGTGGCTTGCCGTAGCGCGTGCGAGGCATTCGGGGACCCAAGGTAT 600
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 648 GGGAATGGGAACGGTGTTGCTTGCCGTAGCGCGTGCGAGGCATTCGGAGACCCAAGGTAT 707
Query 601 TGCTGCAGCGATGCGTACGCGACGCCGGACACGTGTCAGCCTTCGGTTTACTCGCTCTTC 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 708 TGCTGCAGCGATGCGTACGCCACGCCGGACACGTGTCAGCCTTCGGTTTACTCGCTCTTC 767
Query 661 TTTAAACATGCGTGCCCGCGAGCCTACAGCTACGCCTATGACGACAAGACTAGCACTTAC 720
||||| ||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 768 TTTAAGCATGCGTGCCCACGAGCATACAGCTACGCCTATGACGATAAGACGAGCACTTAC 827
Query 721 ACTTGCGCCACCGGAGCCGATTATTTCATCATCTTCTGTCCGCCGCCGTACACAAGCGAG 780
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 828 ACTTGCGCCACCGGAGCCGATTACTTCATCATCTTCTGTCCGCCACCGTATACAAGCGAG 887
Query 781 AAGCTTTTAGGATCGAGGAAAGATGGGGCAACGCTGCCGCTAGTAAACAAGAGCATGATT 840
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 888 AAGCTTTTAGGATCGAGGAAAGATGGTGCAACACTGCCACTAGTAAACAAGAGCATGATT 947
Query 841 CATTTGCGGCATCCGCACAGCAGCTGAGCCACCTCCTTAT 880
||||||| ||||||||||||||||||||||| || |||||
Sbjct 948 CATTTGCCGCATCCGCACAGCAGCTGAGCCATCTTCTTAT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43301834714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5