BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943830
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38680.1 | Symbols: GRP2, CSDP2, CSP2, ATCSP2 | glycine rich... 841 0.0
> AT4G38680.1 | Symbols: GRP2, CSDP2, CSP2, ATCSP2 | glycine rich
protein 2 | chr4:18071884-18073182 REVERSE LENGTH=1299
Length=1299
Score = 841 bits (455), Expect = 0.0
Identities = 585/644 (91%), Gaps = 24/644 (4%)
Strand=Plus/Plus
Query 4 TTAAGAGATTTCGATCAGAATGAGCGGAGACAACGGTGGTGGTGAGAGGCGCAAAGGCTC 63
|||||||||| | |||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 313 TTAAGAGATTCCAATCAAAATGAGCGGAGACAACGGCGGTGGTGAGAGGCGCAAAGGCTC 372
Query 64 CGTCAAGTGGTTTGACACCCAGAAGGGTTTCGGCTTCATCACTCCTGACGACGGTGGCGA 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 CGTCAAGTGGTTTGATACCCAGAAGGGTTTCGGCTTCATCACTCCTGACGACGGTGGCGA 432
Query 124 CGATCTCTTCGTTCACCAGTCCTCCATCAGATCTGAGGGTTTCCGAAGCCTAGCTGCCGA 183
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 433 CGATCTCTTCGTTCACCAGTCCTCCATCAGATCTGAGGGTTTCCGTAGCCTCGCTGCCGA 492
Query 184 TGAGGCTGTCGAGTTCGAGGTTGAGATGGACAACAACAGCCGTCCCAAGGCCATCGATGT 243
|| || || ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 493 AGAAGCCGTAGAGTTCGAGGTTGAGATCGACAACAACAACCGTCCCAAGGCCATCGATGT 552
Query 244 GTCTGGACCCGACGGCGCTCCCGTCCAAGGAAACAGCGGTGGT--T-CATCTGGCGGACG 300
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 553 TTCTGGACCCGACGGCGCTCCCGTCCAAGGAAACAGCGGTGGTGGTTCATCTGGCGGACG 612
Query 301 TGGCGGTTTCGGTGGCGGAAGAGGTGGTGGCCGCGGATCTGGAGGTGGATATGGCGGTGG 360
|||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 613 CGGCGGTTTCGGTGGAGGAAGAGGAGGTGGACGCGGATCTGGAGGTGGATACGGCGGTGG 672
Query 361 ---TGGTGGATACGGAGGAAGAGGAGGTGGC---CGAGGAGGCAACGACTGCTACAAGTG 414
||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 673 CGGTGGTGGATACGGAGGAAGAGGAGGTGGTGGTCGAGGAGGCAGCGACTGCTACAAGTG 732
Query 415 TGGTGAGCCCGGTCACATGGCGAGAGACTGTTCTGACGGcggtggaggttacggaggagg 474
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 733 TGGTGAGCCCGGTCACATGGCGAGAGACTGTTCTGAAGGCGGTGGAGGTTACGGAGGAGG 792
Query 475 cggtggtggttacggagg---aggcgga---ggc--a--ac-tac-gg---cggaggagg 519
||| ||||| |||||||| ||||||| ||| | | | || |||||| ||
Sbjct 793 CGGCGGTGGCTACGGAGGTGGAGGCGGATACGGCGGAGGAGGTGGTGGTTACGGAGGTGG 852
Query 520 cggccgcggaggaggcggaggcgggggaAGCTGCTACAGCTGTGGCGAGTCGGGACATTT 579
||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TGGCCGTGGAGGTGGTGGCGGCGGGGGAAGCTGCTACAGCTGTGGCGAGTCGGGACATTT 912
Query 580 CGCCAGGGATTGCACCAGCGGTGGACGTTGAAACAAACGCCGGT 623
||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 913 CGCCAGGGATTGCACCAGCGGTGGACGTTAAAACCAACGCCGGT 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5