BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943833

Length=616
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38700.1 | Symbols:  | Disease resistance-responsive (dirige...   765    0.0  


> AT4G38700.1 | Symbols:  | Disease resistance-responsive (dirigent-like 
protein) family protein | chr4:18076459-18077177 REVERSE 
LENGTH=719
Length=719

 Score =  765 bits (414),  Expect = 0.0
 Identities = 538/598 (90%), Gaps = 7/598 (1%)
 Strand=Plus/Plus

Query  1    ATTTCTTAATTTTTAT-AATTATGAAGAACACACTCGTAACATTTTTCACACTCTGTTTG  59
            ||| |||||  ||||| ||||||||||| |||| |  ||| |||||||||||||||||||
Sbjct  3    ATTCCTTAA-GTTTATAAATTATGAAGAGCACATTAATAATATTTTTCACACTCTGTTTG  61

Query  60   AGCGTGGCCGTTCTGGCAGCGCGTCACGAGTCCTACTGCGGCAAAACCAAACCGGCTAAT  119
            ||| |||||||| | |  ||||||||||| |||||||  ||||| |||||||||||||| 
Sbjct  62   AGCATGGCCGTTAT-G--GCGCGTCACGAATCCTACTATGGCAACACCAAACCGGCTAAA  118

Query  120  CTGAAGGAGGAAAAAGTGACACGTGTCCGATTCTATCTTCGTGATACTCTCAGTGGCCAA  179
            ||||| ||||| ||||||||||||||| |||| ||||| | |||||||||||||||||||
Sbjct  119  CTGAATGAGGAGAAAGTGACACGTGTCAGATTTTATCTCCATGATACTCTCAGTGGCCAA  178

Query  180  AACCCTACCGCCGTTAGAATCGCACATGCCAATCTCACCGGCGGCTCAGAGTCTCCGGTG  239
            || |||||||||||||||||||||||||| ||||| ||||| |||||||  || ||||| 
Sbjct  179  AATCCTACCGCCGTTAGAATCGCACATGCAAATCTAACCGGTGGCTCAGCTTCGCCGGTA  238

Query  240  GGTTTTGGAAGCCTCTTTGCAATAGACGATCCACTCACCGTCGGACCGGAGAAACATTCG  299
            |||||||||||||| ||||  ||||||||||| ||||||||||| ||||||||||| |||
Sbjct  239  GGTTTTGGAAGCCTGTTTGTGATAGACGATCCGCTCACCGTCGGGCCGGAGAAACACTCG  298

Query  300  AAAGAGATAGGGAACGGTCAAGGGATGTATGTCTCCGGGAGCAAAGAGATGAGCAAATTC  359
            |||||||| ||||| |||||||||||||||||||||||| |||||||  |||||||||||
Sbjct  299  AAAGAGATCGGGAATGGTCAAGGGATGTATGTCTCCGGGTGCAAAGACTTGAGCAAATTC  358

Query  360  TCGATTGTGATGTACGTC-GATTTGGCTTTCACGACGGGGAAGTTTAATGGAAGCTCGAT  418
             |||| || ||||||| | ||||||||||||||| | |||||||||||||||||||||||
Sbjct  359  ACGATCGTCATGTACG-CTGATTTGGCTTTCACGGCAGGGAAGTTTAATGGAAGCTCGAT  417

Query  419  CAGTATCTTCTCGAGGAATCCGGTGGCGGAAGAGGCCGGAGAGCGAGAGATCGCGATAGT  478
            ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct  418  CAGTATCTTCTCGAGGAATCCGGTGGCGGAAGAGGTCGGAGAGCGAGAAATCGCGATTGT  477

Query  479  TGGTGGCCGTGGGAAATTCAGAATGGCGAGAGGTTTCGTCAAAATAAAAACACATAAGAT  538
            |||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct  478  TGGTGGCCGTGGGAAATTCAGAATGGCGAGAGGTTTTGTCAAAGTAAAAACAAATAAGAT  537

Query  539  TGACATGAAAACCGGTGATGCTGTTCTCCGATATGATGCTACTGTTTACCATTATTAa  596
            ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  538  TGACATGAAGACTGGTGATGCTGTTCTCCGATATGATGCTACTGTTTATCATTATTAA  595



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29688380877


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5