BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943837
Length=3257
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38760.1 | Symbols: | Protein of unknown function (DUF3414)... 2959 0.0
> AT4G38760.1 | Symbols: | Protein of unknown function (DUF3414)
| chr4:18084908-18096166 REVERSE LENGTH=6023
Length=6023
Score = 2959 bits (1602), Expect = 0.0
Identities = 1775/1859 (95%), Gaps = 10/1859 (1%)
Strand=Plus/Plus
Query 1404 TCTCTTGAAGAAAGTGCAGCTGCGGAAAGGAAAATCCCTTCTCGAGTCACTCTTTCAAGC 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 4066 TCTCTTGAAGAAAGTGCAGCTGCGGAAAGGAAAATCCCTTCTCGAGTCACTCTTTTAAGC 4125
Query 1464 ATTGATATAGTATGCCGAAAATTCTT-CACCACAGTTGATTCACTTGCCTCTCTCTGGGA 1522
||||||| ||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 4126 ATTGATAAAGTATGCCGAAAATT-TTGCACCACGGTTGATTCACTTGCCTCTCTCTGGGA 4184
Query 1523 TGCACCCAAGATTGTGTTTGATATTCTTACAGCACAGGCAGACTTGCTATCCCGCCTCTT 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4185 TGCACCCAAGATTGTGTTTGATATTCTTACAGCACAGGCAGACTTGCTATCCCGCCTATT 4244
Query 1583 GAAATCCGCAAAGAAAAATCTTTCATTATCTATATGTGTACTTGTCCTGAGAAATGTGGG 1642
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct 4245 GAAATCCGCAAAGAAAAATCTTTCATTATCTGTATGTGCACTTGTCCTGAGAAATGTTGG 4304
Query 1643 GCCTAGCCTCAAAATCCTAGGTAGTTTGAGGCATTCAAATGCTATATTGAAGAAGACGAT 1702
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 4305 GCCTGGCCTCAAGATCCTTGGTAGTTTGAGGCATTCAAATGCTATATTGAAGAAGACGAT 4364
Query 1703 AAACCTCCTGCTTGAGGTGCTGCTCCTGGTTGTGGGTTTTGGTTCAGACAACTCCAACTC 1762
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4365 AAACCTCCTGCTTGAGGTGCTGCTCCTGGTTGTGGGTTTTGGTTCAGACAACTCAAACTC 4424
Query 1763 GAGTGGGATGGGACATATGGTGCTAGGCAAAGATTTTGCAGAAATATCTGATGCCACAAT 1822
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 4425 GAGTGGGATGGGACATATGGTGCTAGCCAAAGATTTTGCAGAAATATCTGATGCTACAAT 4484
Query 1823 TGGATTATTACCCCTTCTCTGCAACTTCATGGGGAATCCTGAGTACTTGACTCTCTGCCT 1882
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 4485 TGGATTATTACCCCTTCTCTGCAACTTCATGGGGAATCCCGAGTACTTGACTCTCTGCCT 4544
Query 1883 GACCACAGTAGACTTGATTCTCA-GAACTTTTTTGACGCCAGAGACATGGTTCCCTATTA 1941
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 4545 GACCACAGTAGACTTGATTCTCAGGAA-TTTTTTGACGCCAGAGACATGGTTCCCTATTA 4603
Query 1942 TACAAAGTCAACTCCGCTTGCAGCATGTTATTCTACAGCTTCAGGATAAGAAATCCACGG 2001
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4604 TACAGAGTCAACTCCGCTTGCAGCATGTTATTCTACAGCTTCAGGATAAGAAATCCACAA 4663
Query 2002 CAT-CGCTTTCAGCAATACTAAAATTTTTCTTAACTATTGCTCAAGTTCATGGCGGTGCT 2060
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4664 CATCCG-TTTCAGCAATACTAAAATTTTTCTTAACTATTGCTCAAGTTCATGGCGGTGCT 4722
Query 2061 CAGATGCTTCTAAATTCTGGATTTTTCTCGACTTTAAGAGCTTTGTTAATGGAGTTTACG 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4723 CAGATGCTTCTAAATTCTGGATTTTTCTCGACTTTAAGAGCTTTGTTAATGGAGTTTCCG 4782
Query 2121 GATGGAATGTCTACTTTGGTATCTGACAATGAAAAGGGCT-GACTGCTAGAAAAGACAGA 2179
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 4783 GATGGAATGTCTACTTTGGTATCTGACAATGAAAAGGGCTCG-CTGCTAGAAAAGACAGA 4841
Query 2180 AAAACCTCAGCATATCTGGGGAATCGGTTTGGCTGTAGTTACTGCCATGGTTCATTCTCT 2239
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4842 AAAAACTCAGCATATCTGGGGAATCGGTTTGGCTGTGGTTACTGCCATGGTTCATTCTCT 4901
Query 2240 AGGATCTGTTTCTGCAGGGGCTGATATTGTGGAGAGTGTCATATCTTACTTTTTCTTAGA 2299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4902 AGGATCTGTTTCTGCAGGGGCTGATATTGTGGAGAGTGTCATATCTTACTTTTTCTTGGA 4961
Query 2300 GAAAGGTTACATGATCTCATACTATCTCGCTGCACCAGATTTCCCTTCTGATGATCGTGA 2359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4962 GAAAGGTTACATGATCTCATACTATCTCGCTGCACCAGATTTCCCTTCTGATGATCGTGA 5021
Query 2360 CAAAGTGAGACCACGAAGTCAACGGACTTGGACTTCCCTTGCTTATCTGAGAGAAACCGA 2419
||||||||| | ||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 5022 CAAAGTGAGGCTACGAAGTCAACGGACGTGGACTTCCCTTGCTTATCTGAGAGTAACCGA 5081
Query 2420 GCATACTCTCCTTCTGATGTGTGCATTAGCTAGCCATTGGAGATCATGGGTTAAAATTAT 2479
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 5082 GCATACTCTCCTTCTGCTGTGTGCATTAGCTAGCCATTGGAGATCATGGGTTAAAATTAT 5141
Query 2480 GAAGGATATGGATTCTCCATTAAGAGAAATGACAATACATCTCTTGGCCTTTATCAGCAA 2539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5142 GAAGGATATGGATTCTCCATTAAGAGAAATGACAATACATCTCTTGGCCTTTATCAGCAA 5201
Query 2540 AGGTGCTCAACGCCTTAGAGAGTCTCAGAGTTTCACATCTCATCTGTTATGCCCTCCAGT 2599
||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 5202 AGGCGCTCAACGGCTTAGAGAGTCTCAGAGCCACATATCTCATCTGTTATGCCCTCCAGT 5261
Query 2600 AGTAAAAGAAGAGTTTGATTCTTGCAAAAGACCATCTTTCATCAACAGCAAGCACGGATG 2659
|| ||||||||||||||||| ||||||||||| ||||||||||| | ||| ||||||||
Sbjct 5262 AGCGAAAGAAGAGTTTGATTCCTGCAAAAGACCGTCTTTCATCAATACCAAACACGGATG 5321
Query 2660 GTTTGCCCTAGCACCTTTAGTTTGTGTTGGGAAACCCAAGATCACTGCAGTATCAATCTC 2719
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 5322 GTTTTCGCTAGCACCTTTAGTTTGTGTTGGGAAACCCAAGATCACTGCAGTATCTATCTC 5381
Query 2720 GGCTGCTCTAGTTATCAGGGGACACACTACAGAACATCTTGGGTCTGTTCCTCAATCGCA 2779
| ||||||||||| | |||||| |||| |||||||||| |||||||||||||||||||||
Sbjct 5382 GACTGCTCTAGTTGTTAGGGGAGACACAACAGAACATCCTGGGTCTGTTCCTCAATCGCA 5441
Query 2780 GTTTTCAGACTCAGTTGCGATACAGATATATAGAGTGGCTTCTCTATTGTTGAAATTTCT 2839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5442 ATTTTCAGACTCAGTTGCGATACAGATATATAGAGTGGCTTCTCTATTGTTGAAATTTCT 5501
Query 2840 GTGTTTACAAGCAGAGTGTGTTGTTACAAGGGCAGAGGAAGTGGGATATGTCGATCTTGC 2899
||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 5502 GTGCTTACAAGCAGAGGGTGTTGTTACGAGGGCAGAGGAAGTGGGATATGTCGATATTGC 5561
Query 2900 CCATTTCCCTGAGCTTCCAGAGCCGGAGATTTTACATGGTCTACAGGACCAAGCCACGG- 2958
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 5562 TCATTTCCCTGAGCTTCCAGAGCCGGAGATTTTACATGGTCTACAGGACCAAGCGACGGC 5621
Query 2959 GAATAGTTGCTGAGCTTTGTGATAATTACAGATCCAAAGAGGTTCCAGATGAAGTAAAGA 3018
|| |||| |||||||| ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 5622 GA-TAGTCGCTGAGCTATGTGATAATTACAAATCCAAAGAGATTCCAGATGAAGTAAAGA 5680
Query 3019 AGTTGTGCCTTTTGCTGATCCAATCGACAGAGATGTCGTTATACTTGGAACTCTGTGTTG 3078
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 5681 AGTTGTGCCTTATGCTGATCCAAACGACAGAGATGTCGTTATACTTGGAACTCTGTGTAG 5740
Query 3079 TTCAGGTTTGCAGGATCCATCCTGTATTTGGGCGTGTGGATAACTTCTCCAAAGACTTGA 3138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5741 TTCAGGTTTGCAGGATCCATCCTGTATTTGGGCGTGTGGATAACTTCTCCAAAGACTTGA 5800
Query 3139 AAAAGCTAGTGAAAGCTGCTGAAGTGCATGCGTACTTAGAAACGTCCATGGATTCACTGA 3198
|||| ||||||||||||||||| |||||| | ||||||||| ||||||| ||||||||||
Sbjct 5801 AAAAACTAGTGAAAGCTGCTGAGGTGCATACCTACTTAGAACCGTCCATAGATTCACTGA 5860
Query 3199 AGAAAATAGCTGCGTTTCTGTATCCCGGATCGCTTTAGGAACGAAACTAACATGTGGAC 3257
||||||||||||||||||||||||| ||||| |||||| ||| |||| |||||| ||||
Sbjct 5861 AGAAAATAGCTGCGTTTCTGTATCCTGGATCACTTTAGAAACAAAACAAACATGAGGAC 5919
Score = 1055 bits (571), Expect = 0.0
Identities = 618/641 (96%), Gaps = 2/641 (0%)
Strand=Plus/Plus
Query 405 CAGCCTGCTCTTTTAGTGGCCATATTTGATTCAGACGAAGACTCAGATGCTGGCAACTTA 464
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 2878 CAGCCTGCTCTTTTAGTGGCCATATTTGATTCAGACGAAGACTCAGATTCTAGCAACGTA 2937
Query 465 AAACAGTCACGCAAAGATGCCTCCTCAATTCCTGACTGGGCTTGTAAATCTCGCTTATTG 524
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2938 AAACAGTCGCGCAAAGATGCCTCCTCAATTCCTGACTGGGCTTGTAAATCTCGCTTACTG 2997
Query 525 CACACTATCCTGCAATATGTAGAGAGAGCAACAGATTTTGTCGATAGATACACAGATATA 584
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 2998 CACACTATCCTGCAATATGTAGAGAGAGCAACCGATTTTGTCGATAGACACACAGATATA 3057
Query 585 TTACTGGGTTTACTTGATTTCTTGAAAACCCTTTGGCAAGAGGCTGGCCAATACGCTAAT 644
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 3058 TTACTGGGTTTACTTGATTTCCTGAAAACCCTTTGGCAAGAGGCTGGCCAATACGCAAAT 3117
Query 645 ATGCTGGAACCGTTTAAGGCGTCAAAAAAGTTGTGGCAGGAATTTTCCAACATTATATCA 704
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3118 ATGCTGGAACCGTTTAAGGCGTCAAAAAAGTTGTGGCAGGAATTTTCCGACATTATATCA 3177
Query 705 CAGGCGTCTAAGATAAAAGATTCCACGGTTGGAAGTTTAGGCAAGGAAGAAATCTCGAAA 764
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3178 CAGGCTTCTAAGATAAAAGATTCGACGGTTGGAAGTTTAGGCAAGGAAGAAATCTCGAAA 3237
Query 765 TTGTTTGTGAAATATCAGTGTCAGGCTTCTGTTTTGGAAATTATGGCTTCCAACATGTTT 824
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3238 TTGTTAGTGAAATATCAGTGTCAGGCTTCTGTTTTGGAAATTATGGCTTGCAACATGTTT 3297
Query 825 TTGTACAAGAAGTTGCTGTTTGCGGAGTCACTTAAAAAGCCATGTGTGGAGCCAAAAAAG 884
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 3298 TTGTACAAGAAGTTGCTGTTTGCGGAGTCACTTAAAAAGCCATGTGTGGAGACTAAAAAG 3357
Query 885 AC-GTCAAATAATGCAGTATCTCCATCCAAATTAACTTGGACAGCTGATTCAGATCCCAA 943
|| | ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3358 ACAG-CAAGTAATGGAGTATCTCCACCCAAATTAACTTGGACAGCTGATTCAGATCCCAA 3416
Query 944 GGATATCTTTTCAAAATGGTGTGACGTATCTGTTTTGGATGGCCTTATCCAGTCAGTTTC 1003
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 3417 GGATATCTTTTCAAAATGGTGTGACATATCTGTTTTGGATGGCATTATCCAGTCAGTTTC 3476
Query 1004 TTCCTTAGATGGTGAAAGTGAAATAAACTTCCAAGCAAAGG 1044
|||||||||||||||||||||||||||||||||||||||||
Sbjct 3477 TTCCTTAGATGGTGAAAGTGAAATAAACTTCCAAGCAAAGG 3517
Score = 553 bits (299), Expect = 5e-156
Identities = 318/327 (97%), Gaps = 2/327 (1%)
Strand=Plus/Plus
Query 1048 GAAAACTTGAGGGTCGTGATATCCCAACTGGTCCATTCAAAGAGCTTTTCCAGTTTCTAG 1107
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3740 GAAAACTTGAGGGTCGTGATATCCCAACTGGTCCTTTCAAAGAGCTTTTCCAGTTTCTAG 3799
Query 1108 TTGAGTCGAGCTTTTGGGAGAAATATAAACAGAAAACTAATAAGGATGTAAATATGGCTT 1167
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3800 TGGAGACGAGCTTTTGGGAGAAATATAAACAGAAAACTAATAAGGATGTAAATATGGCTT 3859
Query 1168 TGGAGGACTGTTTGTTTGACACTCAGCAAATACAGACTGAATTAGGTATTGATATTTGGG 1227
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3860 TGGGGGACTGTTTGTTTGACACTCAGCAAATACAGACTGAATTAGGTATTGATATTTGGG 3919
Query 1228 ATTTCTCTGAGTGGAAGACATCTAAAACAACTGCAGAGGAAATGTTG-ACTTACATGCAG 1286
||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 3920 ATTTCTCTGAGTGGAAGACATCTAAAACAACGGCAGAGGAAATGTTGAAC-TACATGCAG 3978
Query 1287 AGAGCAAATTCGATGGTTTTACTCTCAACTTCGCAGCTCTCTGTTTTGCATGCATTGATT 1346
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3979 AGAGCAAACTCGATGGTTTTACTCTCAACTTCGCAGCTCTCTGTTTTGCATGCATTGATT 4038
Query 1347 TCCGTCTTGATACTTTACGAGGATAAT 1373
||||||||||||||||| |||||||||
Sbjct 4039 TCCGTCTTGATACTTTATGAGGATAAT 4065
Score = 505 bits (273), Expect = 1e-141
Identities = 289/297 (97%), Gaps = 0/297 (0%)
Strand=Plus/Plus
Query 4 CAGTTCTGGAATTTACCATGCAACTTGTGGAGGGGGGACTAGAGAATGATGTAGTTTTTG 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CAGTTCTGGAATTTACCATGCAACTTGTGGAGGGGGGACTAGAGAATGATGTAGTTTTTG 2206
Query 64 CTCTAGTTGTTTTCTCGTTGCAGTATATTCTTGCTAGCCATGAGTATTGGAAATACAATA 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2207 CTCTAGTTGTTTTCTCGTTGCAGTATATTCTTGCTAGCCATGAGTATTGGAAATACAATC 2266
Query 124 ATGGAAGTATGCGTTGGAAAGTGACACTAAAGGTCATTGAGGTGATGAAAACGTGTCTCA 183
|||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 2267 ATGGAAATATGCGTTGGAAAGTGACACTAAAAGTCATCGAGTTGATGAAAACGTGTCTCA 2326
Query 184 GATTCAGTAAATTCTCCACAAAGCTGAGGGATGTTCTCCTTGATATTTTACTGAACGATG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 GATTCAGTAAATTCTCCACAAAGCTGAGGGATGTTCTCCTTGATATTTTACTGAACGATG 2386
Query 244 CCTCTGTTCACAGCGCTCTTTTCCGAATCATTTGTACGACTACGCAAAATTTAGAGA 300
||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 2387 CCTCTGTTCACAGTGCTCTTTTCAGAATAATTTGTACGACTACGCAAAATTTAGAGA 2443
Score = 185 bits (100), Expect = 2e-45
Identities = 104/106 (98%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 302 TATACAGGTTTATGCTGCTCAAGTGCTGTCAAAGTTATTTGCCTTGGCAGAATCATCACA 361
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2664 TATACAGGTTTGTGCTGCTCAAGTGCTGTCAAAGTTATTTGCCTTGGCAGAATCATCACA 2723
Query 362 GCTCTATATAATAAGCAATGCAGGCTTTGGTCTAGACAATAAACAG 407
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2724 ACTCTATATAATAAGCAATGCAGGCTTTGGTCTAGACAATAAACAG 2769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162039225890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5