BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943848

Length=310
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38850.1 | Symbols: SAUR_AC1, ATSAUR15, SAUR15, SAUR-AC1 | S...   470    4e-132


> AT4G38850.1 | Symbols: SAUR_AC1, ATSAUR15, SAUR15, SAUR-AC1 | 
SAUR-like auxin-responsive protein family  | chr4:18126171-18126680 
FORWARD LENGTH=510
Length=510

 Score =  470 bits (254),  Expect = 4e-132
 Identities = 294/313 (94%), Gaps = 3/313 (1%)
 Strand=Plus/Plus

Query  1    CAGGACAAGATAA-CAAAAAGATGGCTTTTTTGAGGAGTTTCTTGGGTGCTAAGCAAATT  59
            ||||| || ||||   |||| |||||||||||||||||||||||||||||||||||||||
Sbjct  66   CAGGAAAACATAAGGGAAAATATGGCTTTTTTGAGGAGTTTCTTGGGTGCTAAGCAAATT  125

Query  60   ATGCGAAGGGAATCATCGTCGACACCAAGAGGATTCATGGCGGTGTATGTAGGAGAGAAT  119
            || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  126  ATTCGAAGGGAATCATCGTCGACACCAAGAGGATTCATGGCGGTCTATGTAGGAGAGAAT  185

Query  120  GATCAGAAGAAGAAGAGATATGTGGTGCCGGTTTCATACTTAAACCAGCCTCTGTTTCAA  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  186  GATCAGAAGAAGAAGAGATATGTGGTGCCGGTTTCATACTTAAACCAGCCTTTGTTTCAA  245

Query  180  GAACTGTTGAGTAAATCCGAGGAAGAGTTTGGTTATGATCATCCTATGGGCGGCTTAACC  239
             |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| 
Sbjct  246  CAACTGTTGAGTAAATCTGAGGAAGAGTTTGGTTATGATCATCCAATGGGCGGCTTAACA  305

Query  240  ATACCATGTCATGAATCTTTGTTCTTCACAGTCACATCTCAGATTCGATGAAGTAGTACA  299
            |||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct  306  ATACCATGTCATGAATCTTTGTTCTTCACAGTCACATCTCAGATACAATGAAGTACTATA  365

Query  300  --ACAACATTTCC  310
              |||||||||||
Sbjct  366  CTACAACATTTCC  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14376576214


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5