BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943849
Length=358
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38860.1 | Symbols: | SAUR-like auxin-responsive protein fa... 579 8e-165
AT2G21220.1 | Symbols: | SAUR-like auxin-responsive protein fa... 326 1e-88
AT1G75580.1 | Symbols: | SAUR-like auxin-responsive protein fa... 130 9e-30
> AT4G38860.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:18130268-18131060 FORWARD LENGTH=793
Length=793
Score = 579 bits (313), Expect = 8e-165
Identities = 340/353 (96%), Gaps = 1/353 (0%)
Strand=Plus/Plus
Query 4 AACACTAAAACTAAAC-AATGGCGGTAAAGAGATCTTCAAAGCTAACACAAACAGCAATG 62
||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 72 AACACTAGAACTAAACAAATGGCGGTAAAGAGATCTTCTAAGCTAACACAAACAGCAATG 131
Query 63 CTAAAGCAAATCCTCAAGAGATGCTCGAGCTTAGGCAAGAAACAATGCTACGACGAGGAA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 CTAAAGCAAATCCTCAAGAGATGCTCGAGCTTAGGCAAGAAACAATGCTACGACGAGGAA 191
Query 123 GGTCTCCCTCTTGACGTACCAAAGGGACATTTTCCGGTTTACGTAGGCGAAAAGCGAACG 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 192 GGTCTCCCTCTTGACGTACCAAAGGGACATTTTCCGGTTTACGTAGGCGAAAAGCGTACA 251
Query 183 AGGTACATCGTACCAATTTCCTTCTTGACTCATCCAGAATTCCTGATCCTTCTTCAACAA 242
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 252 AGGTACATCGTACCAATCTCCTTCTTGACTCATCCTGAATTCCTGATCCTTCTTCAACAA 311
Query 243 GCAGAGGAAGAGTTCGGCTTTCGCCACGACATGGGAGGACTCACTATCCCTTGTGAAGAA 302
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 312 GCAGAGGAAGAGTTCGGCTTTCGTCATGACATGGGAGGACTCACCATCCCTTGTGAAGAA 371
Query 303 GTCGTTTTTCTCTCTCTAACATCCATGATCAGATGAGATAAGAATAGAGAGAG 355
|| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 372 GTTGTTTTTCTCTCTCTAACATCCATGATCAGATGAGAAAATAATAGAGAGAG 424
> AT2G21220.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr2:9089326-9089813 FORWARD LENGTH=488
Length=488
Score = 326 bits (176), Expect = 1e-88
Identities = 283/333 (85%), Gaps = 14/333 (4%)
Strand=Plus/Plus
Query 12 AACTAAACAATGGCGGTAAAGAGATCTTCAAAGCTAACACAAACAGCAATGCTAAAGCAA 71
|||| | |||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 47 AACT-AGCAATGGCGGTTAAGAGATCTTCAAAGCTAACACAAACCGCAATGCTGAAGCAA 105
Query 72 ATCCTCAAGAGATGCTCGAGCTTAGGC-AAGAAACAATGCTACGACGAGGAAGGTCTCCC 130
||||||||||||||||||||||| ||| ||||| |||||||| || ||||| ||||| ||
Sbjct 106 ATCCTCAAGAGATGCTCGAGCTT-GGCCAAGAATCAATGCTATGATGAGGATGGTCTGCC 164
Query 131 TCTTGACGTACCAAAGGGACATTTTCCGGTTTACGTAGGCGAAAAGCGAA-CGAGGTACA 189
| | |||||||||||||| ||||| ||||| || |||||||||||| | | | ||||||
Sbjct 165 TGTAGACGTACCAAAGGGTCATTTCCCGGTCTATGTAGGCGAAAAGAGGAGCC-GGTACA 223
Query 190 TCGTACCAATTTCCTTCTTGACTCATCCAGAA-TTCCTGATCCTT-CTTCAACAAGCAGA 247
||||||| || ||||||||||||||||| || ||| || | || |||||||| |||||
Sbjct 224 TCGTACCCATATCCTTCTTGACTCATCCT-AAGTTCAAGAGC-TTGCTTCAACAGGCAGA 281
Query 248 GGAAGAGTTCGGCTTTCGC-CACGACATGGGAGGACTCACTATCCCTTGTGAAGAAGTCG 306
||||||||||| || | || ||||||||| |||||||| |||||||||||||| |
Sbjct 282 AGAAGAGTTCGGGTT-CAATCATGACATGGGA---CTCACTATTCCTTGTGAAGAAGTTG 337
Query 307 TTTTTCTCTCTCTAACATCCATGATCAGATGAG 339
|||| | |||| |||||||||||||| ||||||
Sbjct 338 TTTTCCGCTCTTTAACATCCATGATCGGATGAG 370
> AT1G75580.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:28377461-28378178 FORWARD LENGTH=718
Length=718
Score = 130 bits (70), Expect = 9e-30
Identities = 237/314 (75%), Gaps = 25/314 (8%)
Strand=Plus/Plus
Query 42 AAGCTAACACAAACAGCAATGCTAAAGCAAATCCTCAAGAGATGCTCGAGCTTAGGCAAG 101
|||||||| ||||| || ||| | ||||||||| | ||||| ||||||||||| || |||
Sbjct 91 AAGCTAACGCAAACGGCGATGATCAAGCAAATCTTGAAGAGGTGCTCGAGCTTGGGAAAG 150
Query 102 AAAC-----AATG-CTAC---GACGA-G-GAA-GG-TCTCCCTCTTGACGTACCAAAGGG 148
|||| |||| ||| || || | || || ||| |||||| |||||||||| ||
Sbjct 151 AAACAGAGTAATGTGTACGGTGAAGACGAAAACGGATCT-CCTCTTAACGTACCAAAAGG 209
Query 149 ACATTTTCCG--GTTTACGTAGGCGAAAAGCGAACGAGGTACATCGTACCAATTTCCTTC 206
|| || || || ||||| || || || || |||||| | || || ||||| ||
Sbjct 210 TCA-CTT-CGTCGTCTACGTCGGAGAGAATCGGGTTAGGTACGTTGTGCCCATTTCGTTT 267
Query 207 TTGACTC-ATCCAGAATTCCTGATCCTTCTTCAACAAGCAGAGGAAGAGTTCGGCTTTCG 265
||||| | | || || || | | | ||||| |||||||| ||||||||||| |||||| |
Sbjct 268 TTGACCCGA-CCTGAGTTTCAGCTTCTTCTCCAACAAGCCGAGGAAGAGTTTGGCTTT-G 325
Query 266 -CCACGACATGGGAGGACTCACTATCCCTTGTGAAGAAGTCGTTTTTCTCTCTCTAACAT 324
|| ||||| | || ||||||||||||||||||||||||||||| | ||||| || |
Sbjct 326 ATCATGACAT--G-GGTCTCACTATCCCTTGTGAAGAAGTCGTTTTCCGATCTCTCACCT 382
Query 325 CCATGATCAGATGA 338
||||| || |||||
Sbjct 383 CCATGCTCCGATGA 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16789428166
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5