BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943858
Length=546
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38920.1 | Symbols: AVA-P3, ATVHA-C3, VHA-C3 | vacuolar-type... 905 0.0
AT4G34720.1 | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0... 582 9e-166
> AT4G38920.1 | Symbols: AVA-P3, ATVHA-C3, VHA-C3 | vacuolar-type
H(+)-ATPase C3 | chr4:18147211-18149267 FORWARD LENGTH=1028
Length=1028
Score = 905 bits (490), Expect = 0.0
Identities = 529/548 (97%), Gaps = 2/548 (0%)
Strand=Plus/Plus
Query 1 AAGATCCAGAATCGCCT--GAGATGTCTACCTTCAGTGGCGATGAGACCGCTCCTTTCTT 58
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 98 AAGATCCAGAATCGCCTGAGAGATGTCTACCTTCAGTGGCGATGAGACCGCTCCTTTCTT 157
Query 59 CGGCTTCCTTGGCGCTGCCGCAGCGCTTGTCTTCTCCTGTATGGGAGCTGCGTACGGGAC 118
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 158 CGGCTTCCTTGGCGCTGCCGCTGCGCTCGTCTTCTCATGTATGGGAGCTGCGTACGGGAC 217
Query 119 AGCCAAGAGTGGTGTGGGAGTGGCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAA 178
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 AGCAAAGAGTGGTGTGGGAGTGGCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAA 277
Query 179 GTCTATTGTCCCAGTTGTTATGGCTGGTGTCTTGGGTATCTATGGTTTGATTATTGCTGT 238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 278 GTCTATTGTCCCAGTTGTTATGGCTGGTGTGTTGGGTATCTATGGTTTGATTATTGCTGT 337
Query 239 TATCATCAGTACCGGGATTAACCCCAAGGCTAAATCTTACTACCTCTTCGATGGATATGC 298
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 338 TATCATCAGTACCGGGATTAACCCCAAGGCTAAATCCTACTACCTCTTCGACGGATATGC 397
Query 299 CCATCTCTCTTCTGGTCTTGCTTGTGGGCTTGCTGGTCTTTCAGCTGGAATGGCCATTGG 358
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 398 TCATCTCTCTTCTGGTCTTGCTTGTGGGCTAGCTGGTCTTTCAGCTGGAATGGCCATAGG 457
Query 359 TATAGTTGGTGATGCTGGTGTCAGGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTAT 418
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TATCGTTGGCGATGCTGGTGTCAGGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTAT 517
Query 419 GATTCTTATCCTCATTTTCGCTGAAGCTCTGGCTCTATACGGTCTCATCGTTGGGATCAT 478
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 518 GATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCAT 577
Query 479 TTTGTCCTCCCGAGCTGGTCAGTCCAGAGCCGAATGAGAAAAGAATGCGGTTCTTAAAGT 538
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 578 TTTGTCCTCCCGAGCTGGTCAGTCCAGAGCCGAATGAGAAAAGAGTGCGGTTCTTGAAGT 637
Query 539 CTGCATGA 546
| ||||||
Sbjct 638 CCGCATGA 645
> AT4G34720.1 | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0
complex, subunit C protein | chr4:16567824-16569295 REVERSE
LENGTH=1024
Length=1024
Score = 582 bits (315), Expect = 9e-166
Identities = 439/500 (88%), Gaps = 4/500 (1%)
Strand=Plus/Plus
Query 21 ATGTCTACCTTCAGTGGCGATGAGACCGCTCCTTTCTTCGGCTTCCTTGGCGCTGCCGCA 80
|||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||| ||
Sbjct 131 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCTGCAGCC 190
Query 81 GCGCTTGTCTTCTCCTGTATGGGAGCTGCGTACGGGACAGCCAAGAGTGGTGTGGGAGTG 140
|| || || |||||||||||||||||||| || || || || ||||||||||| || |||
Sbjct 191 GCACTCGTTTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 250
Query 141 GCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAAGTCTATTGTCCCAGTTGTTATG 200
|| |||||||| || ||||| || |||||||||||||| ||||||||||| |||||||||
Sbjct 251 GCTTCTATGGGAGTTATGAGACCTGAGTTGGTGATGAAATCTATTGTCCCTGTTGTTATG 310
Query 201 GCTGGTGTCTTGGGTATCTATGGTTTGATTATTGCTGTTATCATCAGTACCGGGATTAAC 260
||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 311 GCTGGAGTGTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAAC 370
Query 261 CCCAAGGCTAAATCTTACTACCTCTTCGATGGATATGCCCATCTCTCTTCTGGTCTTGCT 320
||||||||||| |||||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct 371 CCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTCTCGTCTGGTCTTGCT 430
Query 321 TGTGGGCTTGCTGGTCTTTCAGCTGGAATGGCCATTGGTATAGTTGGTGATGCTGGTGTC 380
||||| ||||||||||| |||||||||||||||||||| || ||||||||||| ||||||
Sbjct 431 TGTGGTCTTGCTGGTCTCTCAGCTGGAATGGCCATTGGGATTGTTGGTGATGCCGGTGTC 490
Query 381 AGGGCCAATGCTCAACAGCCAAAGCT-TTTCGTTGGTATGATTCTTATCCTCATTTTCGC 439
||||| |||||||| ||||| ||||| ||| ||||| |||||||||||||| ||||||||
Sbjct 491 AGGGCAAATGCTCAGCAGCCTAAGCTCTTT-GTTGGGATGATTCTTATCCTTATTTTCGC 549
Query 440 TGAAGCTCTGGCTCTATACGGTCTCATCGTTGGGATCATT-TTGTCCTCCCGAGCTGGTC 498
||||| || ||||| ||||| || || || || |||||| || ||||| |||||||| |
Sbjct 550 AGAAGCGCTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTT-TCCTCACGAGCTGGCC 608
Query 499 AGTCCAGAGCCGAATGAGAA 518
|||| ||||| |||||||||
Sbjct 609 AGTCTAGAGCTGAATGAGAA 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26171990587
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5