BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943869
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39010.1 | Symbols: AtGH9B18, GH9B18 | glycosyl hydrolase 9B... 2401 0.0
> AT4G39010.1 | Symbols: AtGH9B18, GH9B18 | glycosyl hydrolase
9B18 | chr4:18175902-18179183 REVERSE LENGTH=1835
Length=1835
Score = 2401 bits (1300), Expect = 0.0
Identities = 1460/1538 (95%), Gaps = 7/1538 (0%)
Strand=Plus/Plus
Query 3 CACCGACGCCGATACACCATGAAATTACATTTATACCCTCTCTCACTTGTCTTCAGCTTC 62
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 64 CACCGACGCCGATACACCATGAAATTACATTTACACCCTCTCTCACTTGTCTTCTTCTTT 123
Query 63 TTCCTCCTCCTCCTCCGTCCGACAATGTCGTCGAACCAGCACGATTACTCCGACGCACTC 122
||| || || || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TTCTTCTTCTTCTTCCGACCGACAATGTCGTCGAACCAGCACGATTACTCCGACGCACTC 183
Query 123 TCAAAATCAATCCTCTTCTTCGAAGGCCAACGCTCCGGTTACCTCCCAAACGACCAGCGT 182
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 184 TCAAAATCAATTCTCTTCTTCGAAGGCCAGCGCTCCGGTTACCTCCCAAACGACCAGCGT 243
Query 183 ATGACGTGGCGTCGTAATTCCGGTCTGAGCGACGGTTGGACACACAACA-CAGATTTAAC 241
||||| ||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 244 ATGACCTGGCGCCGTAACTCCGGTCTGAGCGACGGTTGGACACACAACATC-GATTTAAC 302
Query 242 CGGCGGTTATTACGACGCCGGAGACAACGTCAAATTCAATTTCCCGATGGCTTTCACAAC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 303 CGGCGGTTATTACGACGCCGGAGACAACGTCAAATTCAATTTCCCGATGGCTTTCACCAC 362
Query 302 CACAATGCTCGCGTGGAGCGTAATTGAATTCGGCGAACTCATGCCTTCGTCGGAGCTACG 361
|||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 363 CACAATGCTCGCCTGGAGCGTAATTGAGTTCGGCGAATTCATGCCTTCGTCGGAGCTACG 422
Query 362 AAACTCCCTCGTGGCTCTCCGGTGGAGCTCTAATTACCTCCTCAAATCCGTTTCTCAGCT 421
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 423 TAACTCTCTCGTGGCTCTCCGGTGGAGCTCTAATTACCTCCTCAAATCCGTTTCACAGCT 482
Query 422 ACCAAACCGGATCTTCGTCCAGGTAGGTGATCCAATAGCAGATCATAACTGCTGGGAAAG 481
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 483 ACCTAACCGGATCTTCGTCCAGGTAGGTGATCCGATAGCAGATCATAATTGCTGGGAAAG 542
Query 482 ACCAGAAGATATGGATACACCACGGACTGCTTACGTTGTTAATGCCCCAAATCCGGCTTC 541
||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 543 ACCAGAAGACATGGATACACCACGGACTGCTTACGCCGTTAATGCCCCGAATCCGGCTTC 602
Query 542 TGAAGTGGCCGGAGAAACAACGGCAGCCCTCTCAGCTGCTTCAATTGCTTTTCGATCATC 601
|||||| ||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 603 TGAAGTTGCCGGAGAAACTACGGCGGCCCTCTCAGCTGCTTCGATTGCTTTCCGATCATC 662
Query 602 GGATGCAGGATACTCTCAGACATTGCTCCAAAATGCCGTCAAAACTTTCCAGTTCGCTGA 661
|||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 663 GGATCCAGGATACTCTCAAACATTGCTCCAAAATGCTGTCAAAACTTTTCAGTTCGCTGA 722
Query 662 TATGTATCGCGGTGCTTATAGCAGCAATGATGATATCAAAAATGACGTTTGCCCTTTCTA 721
|||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||
Sbjct 723 TATGTATCGCGGTGCTTATAGCAGCAATGACGATATCAAAAATGATGTGTGTCCTTTCTA 782
Query 722 CTGCGATTTCAACGGATTTCAGGATGAGTTATTGTGGGGAGCAGCTTGGTTGAGAAAAGC 781
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 783 CTGCGATTTCAACGGATTTCAGGATGAGTTATTGTGGGGAGCAGCTTGGCTAAGAAAAGC 842
Query 782 GACTGGTGATGAAAGCTACCTTAATTACATAGAGAGTAACCGTGAACCGTTTGGTGCTAG 841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GACTGGTGATGAAAGCTACCTTAATTACATAGAGAGTAACCGTGAACCGTTTGGTGCTAA 902
Query 842 CGATAACGTAGACGAATTTGGCTGGGACAACAAAGTTGGTGGACTTAATGTTCTCGTTTC 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 CGATAACGTAGACGAATTTGGCTGGGACAACAAAGTTGGTGGACTTAATGTTCTCGTTTC 962
Query 902 AAAGGAAGTTATACAAGGAAATATGTACAACTTAGAGGCGTACAAGGCATCGGCGGAGAG 961
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 963 GAAGGAAGTTATTGAAGGAAATATGTACAACTTAGAGGCGTACAAGGCATCAGCAGAGAG 1022
Query 962 CTTCATGTGTAGTCTGGTCCCGGAATCTTCAGGACCGCATGTTGAGTATACTCCCGCCGG 1021
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 1023 CTTCATGTGTAGTCTGGTCCCGGAATCTTCGGGACCGCATGTTGAGTATACTTCCGCTGG 1082
Query 1022 TCTACTTTACAAACCCGGCGGTAGCCAGCTCCAACATGCGACCACCATATCTTTCCTCCT 1081
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 TCTACTTTACAAGCCCGGCGGTAGCCAGCTCCAACATGCGACCACCATATCTTTCCTCCT 1142
Query 1082 CCTTGTATACGCGCAATATCTTTCAAGAAGCTCTCTCTCCCTCAATTGCGGCACCCTTAC 1141
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CCTCGTATACGCTCAATATCTTTCAAGAAGCTCTCTCTCCCTCAATTGCGGCACCCTTAC 1202
Query 1142 CATCCCTCCTGATCATCTCCGCCGTCTTGCCAAGAAACAGGTGGACTATATATTGGGGGA 1201
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1203 CGTCCCTCCTGATTATCTCCGCCGTCTTGCCAAGAAACAGGTGGACTATATATTGGGGAA 1262
Query 1202 TAATCCGATGGGATTATCGTACATGGTCGGATACGGAGAGAGATATCCAAAGAGGATCCA 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TAATCCGATGGGATTATCGTACATGGTCGGATACGGAGAGAGATATCCAAAGAGGATCCA 1322
Query 1262 CCACCGTGGCTCATCATTGCCATCGATCAAGGATCATCCAGAAGCCATCAGATGCAAAGA 1321
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1323 TCACCGTGGCTCATCATTGCCATCGATTGTGGACCATCCAGAAGCCATCAGATGCAAAGA 1382
Query 1322 TGGGTCGGTTTATTTCAATTCCACCGAACCAAACCCGAACGTTTTGATTGGAGCGGTGGT 1381
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1383 CGGGTCGGTTTATTTCAATTCTACCGAACCGAACCCGAACGTTTTGATTGGAGCGGTGGT 1442
Query 1382 GGGTGGGCCTGGAGAGGACGATAAGTACGATGATGATCGGTCCGATTTCCGCAAGTCCGA 1441
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1443 GGGTGGGCCCGGAGAGGACGATATGTACGATGATGATCGGTCCGATTTCCGCAAGTCCGA 1502
Query 1442 GCCCACTACTTACATCAATGCTCCTTTCGTTGGCGTATTGGCGTACTTTGCAGCCAATCC 1501
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1503 GCCCACTACTTACATCAATGCTCCTTTCGTTGGCGTTTTGGCGTACTTTGCAGCCAATCC 1562
Query 1502 TGGTTCTAGCTAA-C-GTC-A--TGGGAGTAGAATTGG 1534
||||||||||||| | | | | |||||||| ||||||
Sbjct 1563 TGGTTCTAGCTAAGCTGACGACATGGGAGTAAAATTGG 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75702421860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5