BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943897

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39250.1 | Symbols: ATRL1, RSM2, RL1 | RAD-like 1 | chr4:182...   512    8e-145


> AT4G39250.1 | Symbols: ATRL1, RSM2, RL1 | RAD-like 1 | chr4:18271457-18271857 
REVERSE LENGTH=303
Length=303

 Score =  512 bits (277),  Expect = 8e-145
 Identities = 293/301 (97%), Gaps = 0/301 (0%)
 Strand=Plus/Plus

Query  26   ATGGCATCAAGCTCAATGTCTTCTCACAGCTCTGGCTCGTGGACCGCTAAGCAGAACAAA  85
            |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGCATCAAGCTCAATGTCTTCTCAGAGCTCTGGCTCGTGGACTGCTAAGCAGAACAAA  60

Query  86   GCCTTTGAGCAGGCTCTAGCAACCTATGACCAGGACACTCCTAACCGTTGGCAAAATGTT  145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCCTTTGAGCAGGCTCTAGCAACCTATGACCAGGACACTCCTAACCGTTGGCAAAATGTT  120

Query  146  GCCAAAGTCGTGGGTGGAAAAACAACAGAGGAGGTAAAGAGACACTACGAACTCCTAGTG  205
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  121  GCCAAAGTCGTGGGTGGAAAAACAACAGAGGAGGTAAAGAGACACTACGAACTCTTAGTG  180

Query  206  CAAGATATCAACAACATAGAGAACGGTCATGTTCCATTCCCAAACTACAGAACTAGTGGA  265
            ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  181  CAAGACATCAACAGCATAGAGAACGGTCATGTTCCATTCCCAAACTACAGGACTAGTGGA  240

Query  266  GGCTGCACCAATGGCAGGCTTAGTCAGGAGGAAAAAAGGATGAGAAACATGAGGATGCAG  325
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  241  GGCTGCACTAATGGCAGGCTTAGTCAGGAGGAAAAAAGGATGAGAAACATGAGGCTGCAG  300

Query  326  T  326
            |
Sbjct  301  T  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5