BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943901
Length=1499
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39280.1 | Symbols: | phenylalanyl-tRNA synthetase, putativ... 2503 0.0
> AT4G39280.1 | Symbols: | phenylalanyl-tRNA synthetase, putative
/ phenylalanine--tRNA ligase, putative | chr4:18281444-18284900
REVERSE LENGTH=1724
Length=1724
Score = 2503 bits (1355), Expect = 0.0
Identities = 1447/1492 (97%), Gaps = 3/1492 (0%)
Strand=Plus/Plus
Query 3 ACTTGAAGAGATTTTTTAATGGCGGAAGAGGCGATACTAGGGTTCCTGCAGAACAATGAA 62
|||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 53 ACTTCAAGAGATTACTT-ATGGCGGAAGAGGCGATACTAGGGTTCCTTCAGAACAATGAA 111
Query 63 CAGATCACGGATTCGGGTCAATTTTCTGCTGAATTCAACCTCGACCACAACGAAGTCGTC 122
|||||||| |||||||||||||| ||||| || |||||| |||||||||||||| |||||
Sbjct 112 CAGATCACTGATTCGGGTCAATTCTCTGCCGAGTTCAACATCGACCACAACGAACTCGTC 171
Query 123 AATGTCATCAAAAGTCTCCATGGTTTTCGTTACATCGATGTTCAGGACATTAAAAAGGAG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 AATGTCATCAAAAGTCTCCATGGTTTTCGTTACATCGATGTTCAGGACATTAAAAAGGAG 231
Query 183 ACATGGGTTCTGACTGATGAAGGGAAGAAATATGCAGCAGAAGGGTCACCAGAGGTGCAA 242
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 232 ACATGGATTCTGACTGATGAAGGGAAGAAATATGCGGCAGAAGGGTCACCAGAGGTTCAA 291
Query 243 CTTTTCTTAGCTGTGCCTGAAGAAGGCAGCATATCAAAAGATGAGCTCCAGAAAAAGCTA 302
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 292 CTTTTCTTAGCTGTTCCTGAAGAAGGCAGCATATCAAAAGATGAGCTCCAGAAAAAGTTA 351
Query 303 GCTCCTTCAGTCTTCAAGATCGGCTGTTCACAAGCTGGTAAAAACAAGTGGGTGGAAATG 362
|||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 352 GCTCCTGCAGTCTTCAAGATCGGCTGTTCTCAAGCTGGAAAAAACAAGTGGGTGGAAATG 411
Query 363 GGAAAGCAAGTTTCGAGGAAGGTTAAACATGTAGAAGATAAAGTGAAAGGCCAGCTTTTA 422
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 412 GGAAAGCAAGTCTCGAGGAAGGTTAAAGATGTAGAAGATAAAGTGAAAGGCCAGCTTTTA 471
Query 423 CAAATACAAGAAGGGAAGGAATCTGACAAAGACAGTATCAATTCTCTTAAAGCCAGAAAA 482
||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 472 CAAATACAACAAGGGAAGGAATTTGACAAAGAAAGTATCAATTCTCTTAAAGCCAGAAAA 531
Query 483 CTTATCGTACCACAGATATGGAAGGGGTATTCCGTAAAGAAAGGTCCTAATTATGCTCCC 542
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CTCATAGTACCACAGATATGGAAGGGGTATTCCGTAAAGAAAGGTCCTAATTATGCTCCC 591
Query 543 GAGAGAAAGAAAGTGGCTACCGATTTGACTCGAGAAAATCTTCAAAACTGGAAAGAGTTA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GAGAGAAAGAAAGTGGCTACCGATTTGACTCGAGAAAATCTTCAAAACTGGAAAGAGTTA 651
Query 603 GAGTTTAAGGAGTATAACTTTGAAGCTAAAGGAGCGCCTCTTGAGGCTGGGCATCTTCAC 662
|||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||
Sbjct 652 GAGTTTAAGGAGTATAACTTCAAAGCTAAAGGAGCGCCTGTTGACGCTGGGCATCTTCAC 711
Query 663 GCCCTTCTCAAGGTGCGGAAGCAGTTTAAAGACATATTTGTTCAGATGGGGTTTGAGGAG 722
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GCTCTTCTCAAGGTGCGGAAGCAGTTTAAAGACATATTTGTTCAGATGGGGTTTGAGGAG 771
Query 723 ATGCCAACAAACAACTTTGTGGAGAGCAGCTTCTGGAATTTTGATGCTTTGTTCCAGCCT 782
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ATGCCAACAAACAACTATGTGGAGAGCAGCTTCTGGAATTTTGATGCTTTGTTCCAGCCT 831
Query 783 CAGCAGCACCCTGCTCGTGATTCTCATGATACCTTCTTTCTAAAAGTTCCTTCTACTACA 842
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 832 CAGCAGCACCCTGCTCGTGATTCTCATGACACCTTCTTTCTAAAAGTTCCCTCTACTACA 891
Query 843 AGGACACTTCCGGAAGATTATGTTGAGAGGGTGAAACGTGTTCATGAGTCTGGTGGTTAT 902
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 AGAACACTTCCGGAAGATTATGTTGAGAGGGTGAAACGTGTTCATGAGTCTGGTGGTTAT 951
Query 903 GGATCAAGAGGGTATAATTATGATTGGAAAAGAGAAGAAGCAAACAAGAATCTTCTTCGT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GGATCAAGAGGGTATAATTATGATTGGAAAAGAGAAGAAGCAAACAAGAATCTTCTTCGT 1011
Query 963 ACTCACACAACGGCTGTCTCATCTAGGATGCTTTATGCACTAGCACAGAAACCTTTTGTG 1022
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 ACCCACACAACGGCTGTCTCATCTAGGATGCTTTATGCACTAGCACAGAAACCTTTTGTG 1071
Query 1023 CCCAAGAAGTACTTTTCGATTGACCGTGTCTTCAGAAACGAGGCTGTTGATCGGACCCAC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 CCCAAGAAGTACTTTTCGATTGACCGTGTCTTCAGAAACGAGGCTGTTGATCGGACCCAC 1131
Query 1083 CTTGCAGAGTTCCATCAAATTGAAGGTTTGATATGTGATCGGGGCCTTACACTTGGAGAC 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CTTGCAGAGTTCCATCAAATTGAAGGTTTGATATGTGATCGGGGCCTTACACTTGGAGAC 1191
Query 1143 CTGATTGGTGTATTAAAAGACTTCTTCTCACGCTTAGGGATGTCGAAACTGCGTTTCAAG 1202
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1192 CTGATTGGTGTATTAGAAGACTTCTTCTCACGCTTAGGGATGTCGAAATTGCGTTTCAAG 1251
Query 1203 CCAGCTTACAACCCTTACACAGAGCCAAGCATGGAGATTTTCAGCTACCATGAAGGTTTA 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CCAGCTTACAACCCTTACACAGAGCCAAGCATGGAGATTTTCAGCTACCATGAAGGTTTA 1311
Query 1263 GGGAAGTGGGTGGAGATTGGAAACTCTGGAATGTTCAGACCCGAAATGCTTCTACCAATG 1322
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1312 GGGAAGTGGGTGGAGATTGGAAACTCTGGGATGTTCAGACCCGAAATGCTTCTACCGATG 1371
Query 1323 GGTCTCCCCGAGGATGTTAGAGTCATCGCTTGGGGTCTTTCTCTTGAAAGACCAACAATG 1382
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1372 GGTCTCCCCGAGGATGTTAGAGTCATCGCTTGGGGTCTCTCTCTTGAAAGACCAACAATG 1431
Query 1383 ATATTATATGGTATCGACAACATCCGAGATTTGTTTGGACACAAGGTGGATCTCGATCTT 1442
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 ATATTATACGGTATCGACAACATCCGAGATTTGTTTGGACACAAGGTGGATCTCGATCTT 1491
Query 1443 ATTAAACGGAATCCGATCTGCCGAATTGGAATCTGAGTGATAT-TTT-GATT 1492
|||||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 1492 ATTAAACGGAATCCGATCTGCCGAATTGGAATCTAAGTGATATATTTTGATT 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73945402785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5