BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943904

Length=562
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39320.1 | Symbols:  | microtubule-associated protein-relate...   638    0.0  


> AT4G39320.1 | Symbols:  | microtubule-associated protein-related 
| chr4:18289055-18289857 FORWARD LENGTH=703
Length=703

 Score =  638 bits (345),  Expect = 0.0
 Identities = 501/574 (87%), Gaps = 20/574 (3%)
 Strand=Plus/Plus

Query  1    CTTAT-AATAGAAAAGGCTATATGGGGAATTGTGCACTAAAGCCAAAAGTTCTGTCAGAA  59
            ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  27   CTTATAAATAGAGAAGGCTATATGGGGAATTGTGCACTAAAGCCAAAAGTTCTGTCAGAA  86

Query  60   ACCGGAGCTCCGGCGCCGGAGGAGCTCAAGGATTCACTTCTTGAATACCATAAGATCGAC  119
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  87   ACCGGAGCTCCGGCGCCGGAGGAGCTCAAGGATTCACTTCTTGAATACCATAAGATGGAC  146

Query  120  GCTGCAAAATCTCTTAGCAACTTGTTCCTTCaagacaagacagagaagacaacgaaagaa  179
            ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||
Sbjct  147  GCTGCAAAATCTCTTAGCAACTTGTTCCTTCAAGACAAGGCAGATAAGATAACGAAAGAA  206

Query  180  gacgagaagatcacaccagaaaagaTGCCGGTAACTGAAGATCTGAAAACAGCTTTGGCG  239
            ||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||| |
Sbjct  207  GACGAGAAGATCACACCGGAAAAGATACCGGTTACTGATGATCTGAAAACAGCTTTGGAG  266

Query  240  GAGGAAAA-ATCTCCGACTAAAGAGGCAAAATCTCCGGTAACAGAGACCAAA-TATGCGA  297
            |||||||| | ||||||| ||||||||||||||||||| ||||||||| ||| ||| || 
Sbjct  267  GAGGAAAATA-CTCCGACCAAAGAGGCAAAATCTCCGGCAACAGAGAC-AAAGTATTCGG  324

Query  298  TAACAGAGACAAA-AGCTCCGGCTGACGAGAATATAACT--GAAAATCTGAAAACAGTTT  354
            ||||||||| ||| ||||||||||||| |||| |||||   | ||||  ||   | ||| 
Sbjct  325  TAACAGAGA-AAAGAGCTCCGGCTGACAAGAAGATAACACCGGAAAT--GATGCCGGTTA  381

Query  355  -TGGAGGAG--GCAAA-A-TCTCCGGCAACAG-AGACAAAAACTCCTATTACCGAGACAA  408
             || || |   | ||| | | |  || |  || || ||||| |||||   || |||||||
Sbjct  382  CTGAAG-ATCTGAAAACAGTTTT-GG-AGGAGGAGGCAAAACCTCCTGCAACAGAGACAA  438

Query  409  AAGCTCCGGTTGATGATCAGAAGGTGAAGAACGAAGAGGCCATTCGTAAAGAGAAAGTCA  468
            |||||  ||||||||||||||||||||||||||||| |||| ||||| |||||||| |||
Sbjct  439  AAGCTATGGTTGATGATCAGAAGGTGAAGAACGAAGTGGCCGTTCGTGAAGAGAAAATCA  498

Query  469  TTGACGTTGTGACTGTGAAAGAGACCGGAACAGAGGCGAAAGCAGAGGAGGTGGGAAGAG  528
            ||||| | |||||||||||||||| || ||||||||||||| ||||| ||||||||| ||
Sbjct  499  TTGACCTCGTGACTGTGAAAGAGAACGAAACAGAGGCGAAAACAGAGTAGGTGGGAAAAG  558

Query  529  AAGCAGCACAGTGAAACAGCCTTGAAACGCCAGT  562
            ||  | |||||||||||||||||||||||| |||
Sbjct  559  AATAAACACAGTGAAACAGCCTTGAAACGCTAGT  592


 Score = 54.7 bits (29),  Expect = 9e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  360  GAGGCAAAATCTCCGGCAACAGAGACAAA  388
            |||||||||||||||||||||||||||||
Sbjct  288  GAGGCAAAATCTCCGGCAACAGAGACAAA  316



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26975736939


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5