BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943918

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39420.2 | Symbols:  | unknown protein; INVOLVED IN: biologi...  87.9    4e-17


> AT4G39420.2 | Symbols:  | unknown protein; INVOLVED IN: biological_process 
unknown; LOCATED IN: cellular_component unknown; 
EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, 
LP.02 two leaves visible; Has 20 Blast hits to 19 proteins 
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr4:18339287-18355093 FORWARD LENGTH=10189
Length=10189

 Score = 87.9 bits (47),  Expect = 4e-17
 Identities = 49/50 (98%), Gaps = 0/50 (0%)
 Strand=Plus/Minus

Query  1   GAAACATTTGACGACGTGAGATGGAGAAATCGTTGGTGGTTTCCTCCGTC  50
           ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  50  GAAACATTTGACGACGTGAGATGGAGAAATCATTGGTGGTTTCCTCCGTC  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12416134003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5