BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943920
Length=2558
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39420.2 | Symbols: | unknown protein; INVOLVED IN: biologi... 2202 0.0
> AT4G39420.2 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown;
EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible,
LP.02 two leaves visible; Has 20 Blast hits to 19 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr4:18339287-18355093 FORWARD LENGTH=10189
Length=10189
Score = 2202 bits (1192), Expect = 0.0
Identities = 1293/1341 (96%), Gaps = 9/1341 (1%)
Strand=Plus/Plus
Query 1033 AGCATCTCAAGCTTGATTGTGGTGAGGTTGATGGTGTTGTTCTAGGTTCTTGGACTAAAA 1092
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3760 AGCATCTCAAGATTGAGTGTGGTGAGGTTGATGGTGTTGTTCTAGGTTCTTGGACTAAAA 3819
Query 1093 TCAATGAGAGTGCATCTGAGCATGCGCCTGATGAAACCGATGCAGTTGCTGGCTACTGGG 1152
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3820 TCAATGAGAGTGCATCTGAGCATGCACCTGATGAAACCGATGCAGTTGCTGGCTACTGGG 3879
Query 1153 CTGCAGCAGCCGTGTGGTCAAATGCTTGGGATCAGAGAACATTTGATCATATAGTCTTGG 1212
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3880 CTGCAGCAGCTGTGTGGTCAAATGCTTGGGATCAGAGAACATTTGATCATATAGTCTTGG 3939
Query 1213 ATCAACCCTTAGTCATGGGTGTTCATGTTCCATGGGATTCTCAGCTGGAGTATTATATGT 1272
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3940 ATCAGCCCTTAGTCATGGGTGTTCATGTTCCATGGGATTCTCAGCTGGAGTATTATATGT 3999
Query 1273 GTCACAATGATTGGGATGAAGTCCTTAAGCTGTTGGATCTCATTCCTGAGGATGTTTTAT 1332
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 4000 GTCACAATGACTGGGATGAAGTTCTTAAGCTGTTGGATCTCATTCCTGAGGATGTTTTAT 4059
Query 1333 ATGATGGAAGTTTGCAAATTGCTTTGGATGGTCCGAAACAGTCTTCTGGCGTAAATTATT 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4060 ATGATGGAAGTTTGCAAATTGCTTTGGATGGTCCGAAACAGTCTTCTGGCGTAAATTATT 4119
Query 1393 CAGTTTCTTCCCGTAGCGAGTATATATGCTCCATCGAAGAAGTGGATGCTGTACTTATGG 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4120 CAGTTTCTTCCCGTAGCGAGTATATATGCTCCATCGAAGAAGTGGATGCTGTACTTATGG 4179
Query 1453 ATGTTCCTTATATCAAGATATTTAGATTACCTGCAGATATTCGGTGCTCCTTGTGGCTAA 1512
|||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||
Sbjct 4180 ATGTTCCTTATATCAAGATATTTAGATTGCCTGGAGATATCCGGTGCTCCTTGTGGCTAA 4239
Query 1513 CAGCACTCATGGAGCAGGAACTTGCAAGAAAACTTATATTCTTAAAAGAATATTGGGAAA 1572
|| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 4240 CAACACTCATGGAGCAGGAACTAGCAAGAAAACTTATATTTTTAAAAGAATATTGGGAAA 4299
Query 1573 ACGCTCTAGATGTAGTATATCTTCTGGCTCGGGCAGGTGTTATCCTTAGTAATTGTGAAG 1632
|||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||
Sbjct 4300 ACGCTCTAGATGTAGTATATCTTCTGGCCCGGGCAGGTGTCATCCTTGGTAATTGTGAAG 4359
Query 1633 TTTCATTTAAGGAGGAAACTTGTAGGCCATCCTTAGATCTTTGTTTGTCCATAAAGAAGG 1692
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 4360 TTTCATTTAAGGAGGAAACTTGTACGCCATCGTTAGATCTTTGTTTGTCCATAAAGAAGG 4419
Query 1693 GAGGGGCAAATGTTGATACCCTGAGTGCTGTACACAAGCTATTCATACATTATTGCACAC 1752
|||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 4420 GAGGAGCAAATGTTGATACCCTGAATGCTGTACACAAGCTATTCATACATTACTGCACAC 4479
Query 1753 AATATAATCTGCCAAACCTTCTGGATCTGTACCTTGATCATCACGAATTGGTCCTAGATA 1812
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4480 AGTATAATCTGCCAAACCTTCTGGATCTGTACCTTGATCATCACGAATTGGTCCTAGATA 4539
Query 1813 ATGATTCACTCAGTGCATTGCAGGAAGCTGTTGGTGATTCTCACTGGGCAAAATGGTTGC 1872
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4540 ATGATTCACTCAGTTCATTGCAGGAAGCTGTGGGTGATTCTCACTGGGCAAAATGGTTGC 4599
Query 1873 TACTCTCCAGGATCAAGGGCCGGGAGTATGATGCTTCATTTTCAAATGCACGCTCAATTA 1932
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 4600 TACTCTCCAGGATCAAGGGCCGGGAGTATGATGCTTCATTTTCAAACGCACGCTCAATTA 4659
Query 1933 TGTCACGTAGTGGGGCACCAAATGGTGAACCCAGTGTTCCAGAGACTGATGAAATTGTTT 1992
||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||||
Sbjct 4660 TGTCACGTAACGGGGCACCAAATAGTGAACCCAGTGTTCCAGAGATTGATGAAATGGTTT 4719
Query 1993 GTACTGTTGATGATATTGCCGAAGGGGCAGGAGAAATGGCAGCTTTAGCAACTATGATGT 2052
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 4720 GTACTGTTGATGACATTGCCGATGGGGCAGGAGAAATGGCAGCTTTAGCAACTATGATGT 4779
Query 2053 GTGCTCCGGTGCCAATTCAAAAATCCTTGAGTACTGGCAGTGTGAACAGGCACACTAACT 2112
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4780 GTGCTCCAGTGCCAATTCAAAAATCCTTGAGTACTGGCAGTGTGAACAGGCACACTAACT 4839
Query 2113 CTTCTGCGCAGTGCACTTTGGAGAATTTGAGATCATTTCTTCAGAGATTCCCTACCTTAT 2172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4840 CTTCTGCGCAGTGCACTTTGGAGAATTTGAGATCATTTCTTCAGAGATTCCCTACCTTAT 4899
Query 2173 GGAGTAAGCTTGTTACTGCTTGTCTTGGGGAAGATATATCTGGGAACCTTTTGCGGACCA 2232
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 4900 GGAGTAAGCTTGTTAGTGCTTGTCTTGGGGAAGATATATCCGGGAACCTTTTGCGGACCA 4959
Query 2233 AGACTAAGAATG-------AG--TATTTGAATTGGCGTGACGGTGTATTCTTTTCAACTG 2283
|||||||||||| || ||||||||||||||||||||||||||||| ||||| |
Sbjct 4960 AGACTAAGAATGTCTTGTCAGAGTATTTGAATTGGCGTGACGGTGTATTCTTCTCAACGG 5019
Query 2284 CACGTGATACCTCACTCCTGCAGATGTTGCCTTGTTGGTTTCCTAAGGCGGTTCGTAGAT 2343
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 5020 CACGTGATACCTCACTCCTCCAGATGTTGCCTTGTTGGTTTCCTAAGGCGGTTCGTAGAT 5079
Query 2344 TAGTTCAGCTTTATATCCAGG 2364
|||||||||||||||| ||||
Sbjct 5080 TAGTTCAGCTTTATATTCAGG 5100
Score = 1653 bits (895), Expect = 0.0
Identities = 983/1025 (96%), Gaps = 8/1025 (1%)
Strand=Plus/Plus
Query 11 GTCTTTGAAGATGCTTGGTAATGTGAAGCTGGCAGAGGAAGGCATGCTGAGGGTGCTCTT 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2618 GTCTTTGAAGATGCTTGGTAATGTGAAGCTGGCAGAGGAAGGCATGCTGAGGGTGCTCTT 2677
Query 71 TTCTGCTGTGTATCTATTGTCGCACAAGAATAGAAACGATAATCAGATTTCTGCTGTATC 130
||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||
Sbjct 2678 TTCTGCTGTGTATCTATTGTCGCGCAAGGATAGAAACGATAATGAGATTTCTGCTGTATC 2737
Query 131 TAGGCTCCTTGGATTGGCTACAAGGTTTGCGACTGAGATGATTCGCATATATGGGTTACT 190
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2738 TAGGCTCCTTGGATTGGCTACAATGTTTGCGACTGAGATGATTCGCAGATATGGGTTACT 2797
Query 191 TGAATATCAGAAAGATGGATACATGTTGGACAGCAAACCTAGGACACAAATACTTTCACT 250
|||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 2798 TGAATATCGGAAAGATGTTTACATGTTTGACAGCAAACCTAGGACACAGATACTTTCACT 2857
Query 251 TCCACCAGTTTCACTTCATATTGATGTAATGGAAAATTCAAGGAGGTTGTCAGAGATGGG 310
|||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||
Sbjct 2858 TCCAGCAGTTTCACTTAATATCGATGTAATGGAAAATTCAAGGAGGCTGTCAGAGATGGG 2917
Query 311 TTATCTTTTAGAGATCACCCGAAATTTTCAATCCCGTATTACCAGAAAGTTTAAGAAGCT 370
|||||| || || |||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 2918 TTATCTATTGGAAATCACCAGGAATATTCAATCCCGTATTACCAGAAAGTTTAAGAAGCT 2977
Query 371 AGGAAAGGGAAAGAATGAAAAGTCACTGAACCTGGTAGACCCAAATTCTTTGCAGGATGA 430
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2978 AGGAAAGGGAAATAATGAGAAGTCACTGAACCTGGTAGACCCAAATTCTTTGCAGGATGA 3037
Query 431 TTCTCAGCTTGAAATTGTTCCAGATCCAGCATCTGCAGAGTCAAGACAACTTGACACGTC 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3038 TTCTCAGCTTGAAATTGTTCCAGATCCAGCATCTGCAGAGTCAAGACAACTTGACACTTC 3097
Query 491 TTTATTCGATACCAATGGGGAGCTTGCTTTGACGCCTATGGGTATGATGACAGCCAAAGC 550
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3098 TTTATTTGATACCAATGAGGAGCTTGCTTTGACGCCTATGGGTATGATGACAGC------ 3151
Query 551 TGGTCAAATCATTGGCGAAAGAAGTTATGCATCTGGCCTTGTACCCCAAGTGG-TAGTTG 609
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 3152 TGGTCAAATCATTGACGAAAGAAGTTATGCATCTGGCCTTGTACCCCAAG-GGATAGTTG 3210
Query 610 AAGAGAAGAAAGTTCTTCCTCTGGAAAATCCCAAGGAGATGATGGCTCGTTGGAAGGCTA 669
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3211 AAGAAAAGAAAGTTCTTCCTCTGGAAAATCCCAAGGAGATGATGGCTCGTTGGAAGGCTA 3270
Query 670 ACAATCTGGATTTGAAAACTGTGGTTAAGGATGCCTTGCTCTCTGGTCGACTCCCTTTAG 729
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3271 ACAATTTGGATTTAAAAACTGTGGTTAAGGATGCCTTGCTCTCTGGTCGACTCCCTTTAG 3330
Query 730 CTGTTCTCCAATTGCATCTTCAACATTCAAAAGACGTGGTTGAAGATGGAGAGCATCATG 789
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3331 CTGTTCTTCAATTGCATCTTCAACATTCTAAAGACGTGGTTGAAGATGGAGAGCATCATG 3390
Query 790 ATACATTTACTGAAGTTCGTGATATCGGAAGAGCTATTGCTTATGACCTATTTTTGAAGG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3391 ATACATTTACTGAAGTTCGTGATATCGGAAGAGCTATTGCTTATGACCTATTTTTGAAGG 3450
Query 850 GTGAACCTGGGGTTGCCATTGCGACTCTGCAAAGGCTCGGAGAGGATGTAGAAGCGTGTC 909
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 3451 GTGAACCTGGGGTTGCCATTGCCACTCTGCAAAGGCTCGGAGAGGATGTAGAAGCATGTC 3510
Query 910 TCAATCAGTTGGTATTTGGCACAGTGAGAAGATCTATTCGATATCAAATTGCTGAAGAAA 969
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3511 TCAATCAGTTGGTATTTGGCACAGTGAGAAGATCTCTTCGATATCAAATTGCTGAAGAAA 3570
Query 970 TGAGAAAACTTGGTTTCTTAAGACCATATGAAGACAATGTACTGGAGAGGATATCTCTTA 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3571 TGAGAAAACTTGGTTTCTTAAGACCATATGAAGACAATGTACTGGAGAGGATATCTCTTA 3630
Query 1030 TCGAG 1034
|||||
Sbjct 3631 TCGAG 3635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126972532733
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5