BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943928
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39520.1 | Symbols: | GTP-binding protein-related | chr4:18... 2067 0.0
> AT4G39520.1 | Symbols: | GTP-binding protein-related | chr4:18370968-18374204
REVERSE LENGTH=1675
Length=1675
Score = 2067 bits (1119), Expect = 0.0
Identities = 1183/1215 (97%), Gaps = 0/1215 (0%)
Strand=Plus/Plus
Query 1 TCCGGTGTCCTTCTTCCTTTCACTCGCGTTTAACCTCTTTGCCTTGACGTTGTCCCCGTG 60
||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||
Sbjct 120 TCCGGTGTCCTTCTTCCTTTCACTCGCGTATAACCTCTTTTCCTTGACGTTGTCTCCGTG 179
Query 61 AGCTCTCTCTGCTTTGACTGCAACCATGTCGACTATTATGCAGAAGATCAAAGAAATTGA 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGCTCTCTGTGCTTTGACTGCAACCATGTCGACTATTATGCAGAAGATCAAAGAAATTGA 239
Query 121 AGATGAGATGGCTAAAACACAGAAGAATAAAGCTACTTCTCATCATCTGGGTTTGTTAAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGATGAGATGGCTAAAACACAGAAGAATAAAGCTACTTCTCATCATCTGGGTTTGTTAAA 299
Query 181 GGCCAAACTTGCTAAGCTACGGAGGGACCTTCTTGCACCGCCTACCAAAGGTGGCGGTGG 240
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGCCAAGCTTGCTAAGCTTCGGAGGGACCTTCTTGCACCGCCTACCAAAGGTGGCGGTGG 359
Query 241 TGGTGCTGGTGAAGGTTTTGATGTGACTAAAAGTGGAGATTCTAGAGTTGGACTTGTTGG 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 360 TGGTGCTGGAGAAGGTTTTGATGTGACTAAAAGTGGAGATTCTAGAGTTGGACTGGTCGG 419
Query 301 GTTTCCTTCGGTTGGAAAATCTACGCTATTGAACAAGCTGACTGGGACATTTTCTGAGGT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 420 ATTTCCTTCGGTTGGAAAATCTACGCTATTAAACAAGCTGACTGGGACATTTTCCGAGGT 479
Query 361 TGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATTACATATCGTGGAGC 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TGCTTCTTATGAGTTCACGACTTTGACATGCATTCCTGGTGTTATCACATATCGTGGAGC 539
Query 421 TAAAATCCAGTTATTAGATCTTCCTGGTATTATTGAGGGCGCTAAAGACGGAAAAGGTAG 480
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 540 TAAAATCCAGTTATTAGATCTTCCTGGTATTATTGAGGGTGCTAAAGATGGAAAAGGTAG 599
Query 481 AGGAAGACAGGTTATAAGTACTGCTAGGACATGCAACTGCATCTTAATAGTTCTTGATGC 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGGAAGACAGGTTATAAGTACGGCTAGGACATGCAACTGCATCTTAATAGTTCTTGATGC 659
Query 541 CATAAAACCAATTACTCACAAGCGTCTCATTGAGAAAGAGCTCGAAGGATTCGGAATAAG 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 CATAAAACCAATTACTCACAAGCGTCTCATTGAAAAAGAGCTCGAAGGATTCGGAATAAG 719
Query 601 GTTGAACAAGGAGCCACCAAATTTAACATTTAGGAAAAAAGACAAAGGTGGTATCAATCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTTGAACAAGGAGCCACCAAATTTAACATTTAGGAAAAAAGACAAAGGTGGTATCAATCT 779
Query 661 AACTTCTACAGTCGCTGTCACACACCTTGACCTCGACACGGTCAAGGCGATTTGCGGTGA 720
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 780 AACTTCTACAGTCGCTGTCACACACCTTGACCTTGACACCGTCAAGGCGATTTGCGGTGA 839
Query 721 GTACAGGATTCACAACGCTGACATCACCCTGCGCTACGATGCAACCGCTGATGACCTCAT 780
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTACAGGATGCACAATGCTGACATCACCCTGCGCTACGATGCAACCGCTGATGACCTCAT 899
Query 781 TGATGTCATCGAGGGCAGTCGGATATATATGCCCTGTATCTATGCTGTCAACAAGATCGA 840
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 TGATGTCATCGAGGGCAGTCGGATTTATATGCCCTGTATCTATGCTGTCAACAAGATCGA 959
Query 841 TTCAATCACACTTGAGGAACTTGAAATTTTGGACAAACTTCCTCATTACTGTCCTGTCAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTCAATCACACTTGAGGAACTTGAAATTTTGGACAAACTTCCTCATTACTGTCCTGTCAG 1019
Query 901 TGCGCATCTGGAGTGGAATCTTGACGGTCTTCTGGACAAGATATGGGAATACTTGGATCT 960
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1020 TGCGCATCTGGAGTGGAATCTTGATGGACTTCTGGACAAGATATGGGAATACTTGGATCT 1079
Query 961 AACTCGAATCTACACAAAACCGAAGGCAATGAATCCGGATTATGATGATCCCGTTATCTT 1020
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1080 AACTCGAATCTACACAAAACCAAAGGCAATGAATCCGGATTATGATGATCCCGTAATCTT 1139
Query 1021 ATCTTCCAAGAAGAGAACAGTAGAGGACTTCTGCATCCGGATTCACAAAGACATGCTTAA 1080
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATCATCCAAGAAGAGAACAGTAGAGGACTTCTGCATCCGGATTCACAAAGACATGCTTAA 1199
Query 1081 ACAATTCAAGTACGCTCTGGTTTGGGGTTCGAGTGCCAAACACAAGCCACAAAGAGTTGG 1140
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1200 ACAATTCAAGTACGCTCTGGTTTGGGGTTCAAGTGCCAAACACAAGCCACAAAGAGTTGG 1259
Query 1141 AAAGGAACACGAGCTCGAGGATGAGGATGTTGTTCAGATCGTTAAAAAGATATGATTATT 1200
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1260 AAAGGAACACGAGCTTGAGGACGAGGATGTTGTTCAGATCGTTAAAAAGATATGATTTTT 1319
Query 1201 CCAGATAATGGAGAG 1215
||||||||||||||
Sbjct 1320 GCAGATAATGGAGAG 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59688448005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5