BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943935

Length=1232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39756.1 | Symbols:  | Galactose oxidase/kelch repeat superf...  82.4    1e-14
  AT5G28180.1 | Symbols:  | Galactose oxidase/kelch repeat superf...  56.5    6e-07
  AT5G28160.1 | Symbols:  | Galactose oxidase/kelch repeat superf...  56.5    6e-07


> AT4G39756.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr4:18441756-18443000 FORWARD LENGTH=1195
Length=1195

 Score = 82.4 bits (44),  Expect = 1e-14
 Identities = 95/118 (81%), Gaps = 10/118 (8%)
 Strand=Plus/Plus

Query  1068  AACAAGATG-ATTTGGTGTGCGGTGATTGCGCTTGAAAGGCACAACAATCAA-GAGATTT  1125
             ||||||| | |||||||||||||||||||||||||||| ||  || |||  | || ||||
Sbjct  985   AACAAGA-GTATTTGGTGTGCGGTGATTGCGCTTGAAAAGCGTAA-AATTGATGAAATTT  1042

Query  1126  GGGGGAAGGTTGAGTGG-CTTG-ATGCTGTGCTTACTGTCCCTAAGACTTATAAGTTT  1181
             |||| |||||| ||||| || | ||  ||||||||| || |||| || | ||| ||||
Sbjct  1043  GGGGAAAGGTTAAGTGGGCTAGTAT--TGTGCTTACGGTTCCTA-GA-TCATATGTTT  1096


> AT5G28180.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr5:10162783-10163943 FORWARD LENGTH=1059
Length=1059

 Score = 56.5 bits (30),  Expect = 6e-07
 Identities = 33/34 (97%), Gaps = 1/34 (3%)
 Strand=Plus/Plus

Query  1071  AAGATGATTTGGTGTGCGGTGATTGCGCTTGAAA  1104
             ||||| ||||||||||||||||||||||||||||
Sbjct  920   AAGAT-ATTTGGTGTGCGGTGATTGCGCTTGAAA  952


> AT5G28160.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr5:10137926-10139013 FORWARD LENGTH=975
Length=975

 Score = 56.5 bits (30),  Expect = 6e-07
 Identities = 33/34 (97%), Gaps = 1/34 (3%)
 Strand=Plus/Plus

Query  1071  AAGATGATTTGGTGTGCGGTGATTGCGCTTGAAA  1104
             ||||| ||||||||||||||||||||||||||||
Sbjct  836   AAGAT-ATTTGGTGTGCGGTGATTGCGCTTGAAA  868



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60541857270


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5