BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943948
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39580.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1801 0.0
> AT4G39580.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18385684-18386811 REVERSE LENGTH=1128
Length=1128
Score = 1801 bits (975), Expect = 0.0
Identities = 1079/1130 (95%), Gaps = 4/1130 (0%)
Strand=Plus/Plus
Query 28 ATGAACGAAGAGGAGGCACCATCTGAGCAGAAGAAGACGTTATCATTGGTACCCTCACCG 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACGAAGAGGAGGCACCATCTGAGCAGAAGAAGACGTTATCATTGGTACCCTCACCG 60
Query 88 ATCACAAATCTCTTTCTTCCTGATGACATACTTTTGAGCTCCT-TAAGCCGCATTTCAAG 146
| ||| ||||| |||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 61 ACCACGAATCTGTTTCTTCCTGATGACATACTTTTGAGCT-CTCTAAGCCGCATTTCAAG 119
Query 147 ATTGTATTACCCAACTTTCTCCCTTGTCTCCAAGAGTTTCCGGTCTCTCGTTGCTTCACC 206
||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 120 ATTGTATTACCCAACTTTCTCTCTTGTCTCCAAGAGTTTCCGCTCTCTAATTGCTTCACC 179
Query 207 AGAGCTTTATCTGACTCGGTCCATCCTCGGCCGCACCGAGAGTTGTCTTTATGTGTCCTT 266
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAGCTTTATCAGACTCGCTCCATCCTCGGCCGCACCGAGAGTTGTCTTTATGTGTCCTT 239
Query 267 ACGGTTACTTAACGACTCTAACCTCCGATGGTACACTCTCTGTCGTGTTCCGGATCGAAA 326
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 ACGGTTACTTAACGACTCTAACCTCCGATGGTACACTCTCTGTCGAGTTCCGGATCGAAA 299
Query 327 ACTAACAAATTTCTCAGGTGGTCATTTATTGGTCCCGATCCTATCTCGCCATGCTCCTCC 386
||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 300 ACTAACAAATTTCTCAGGTGGTCATTTATTGGTTCCGATCTTATCTCGCTATGCTCCTCC 359
Query 387 TGCTCATTGGTCGAGTGTGGTCGCTGTTGATTCTAATATCTACGCTATTGGAGGGCCTAT 446
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 TGCTCATTGGTCGAGTGTGGTCGCTGTTGATTATAATATCTACGCTATTGGAGGGCCTAT 419
Query 447 CAATGATGCACCATCCTCTAGCGTCTCGGTCTTGGATTGTCAGTGTGACATGTGGCACGA 506
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 420 CAATGATGCACCATCCTCTAGCGTCTCGGTCTTGGATTGTCAGTGTGAGAAATGGCGTGA 479
Query 507 AGCTCCA-CCAATGCGGGTGGCACGAAACTACCCCACTGCGACCGTTCTTAACGGGAAGA 565
|||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 480 AGCTCCGTCCA-TGCGGGTGGCACGAAACTACCCCACTGCGACCGTTCTTGATGGGAAGA 538
Query 566 TTTATGTAGCAGGAGGCTGCGAAGAATGCATTTCATTGGATTGTATAGAAGTGTTTGATC 625
| ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 539 TATATGTAGCAGGAGGCTGTGAAGATTGCACTTCATTGGATTGTATAGAAGTGTTTGATC 598
Query 626 CTAAGACTCAGACTTGGGACTCTGTGGCAAGTCCTGGCACCGAGAGATGCGAGAGACTTG 685
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTAAGACTCAAACTTGGGACTCTGTGGCAAGTCCTGGCACCGAGAGATGCGAGAGACTTG 658
Query 686 TGTACAAGAGCGTTGGGATCGAAGGAAAATATCACTTGTTTGGGGGTGCGGGTCATGTGG 745
| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 659 TATACAAGAGCGTAGGGATCGAAGGAAAGTATCACTTGTTTGGCGGTGCGGGTCATGTGG 718
Query 746 CTTACGATCCGAAAGAAGGTAGATGGGACTCAGTTGGAATGGATATGGATATGGGTCGGA 805
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 CTTACGACCCGAAAGAAGGTAGATGGGACTCAGTTGGAATGGATATGGAGATGGGTCGGA 778
Query 806 CATGGGTTTCGTATTGTGTGATAAACAATATATTGTTCTATTATAATAATAGAAAGTTTA 865
|||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 779 CATGGGTTTCATATTGTGTGATAAACAATATATTGTTCTATTATAATGATAGAGAGTTTA 838
Query 866 AATGGTATGACTATAAAGGAGGATTTTGGAGAAAGTTGATGGGGTTGGAACGGCTAATCA 925
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 839 AATGGTATGACTATAAAGGAAGATTTTGGAGAAAGTTGATGGGGTTGGAACGGCTAATCA 898
Query 926 AGTTTCTATGCTATAGCCGTGTTAACTTAGCGGCTTACGGTGATAAGATGGCGGTTTTAT 985
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 899 AGTTTCTATGCTATAGCCGTGTTAACTTGGCGGCTTACGGTGAGAAGATGGCGGTTTTAT 958
Query 986 GGGAAACTTCTGTGCCTTCTAGCTCCAAGAACAAGATGATTTGGTGTGCGGAGATTACAA 1045
|||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 959 GGGATACTTTTGTGCCTTCTAGCTCTAAGAACAAGATGATTTGGTGTGCGGAGATTACGA 1018
Query 1046 TTGAAAGGCACGACATATACGAGATTTGCGGTAAGACCCAGTGGTTTGATGTTGTGCTTA 1105
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1019 TTGAAAGGCACGACATATACGAGATTTGCGGTAAGACTGAATGGTTTGATGTTGTGCTTA 1078
Query 1106 GAGTTCCCAAATCACATGAATTGGTACATGTTCTTGCTGCTACTGTTTGA 1155
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1079 GAGTTCCCAAATCATATGAATTGGTACATGTTCTTGCTGCTACTGTTTGA 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57680426205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5