BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943955
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39630.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1122 0.0
> AT4G39630.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18397591-18399387
REVERSE LENGTH=984
Length=984
Score = 1122 bits (607), Expect = 0.0
Identities = 699/743 (94%), Gaps = 8/743 (1%)
Strand=Plus/Plus
Query 4 TTCGGAAGAAATCGATAATGCCGAAGCGAAAAGCAAAGGAGTGTGTCAAACTCACcgaag 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 108 TTCGAAAGAAATCGATAATGCCGAAGCGAAAAGCAAAGGAGTGTGTCAAACTCACTGAAG 167
Query 64 aagataagaacgatgacaagcgaattcgaagagaagagaagaaagaagacttcgtcgacg 123
|||||| |||||| || || |||||||||| ||||||||||||||||||||||||||||
Sbjct 168 AAGATAGGAACGACGAGAAACGAATTCGAATCGAAGAGAAGAAAGAAGACTTCGTCGACG 227
Query 124 aagaagttgaaagaCAAATTGCTGCGATTAGAGCAATCCGTGATGTTGAGATTGAACAAA 183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 AAGAAGTCGAAAGACAAATTGCTGCGATTAGAGCAATCCGTGATGTTGAGATTGAACAAA 287
Query 184 CT-CTAACTGCATTGAGGTTGCTTCGCTCAAATTTTACTGAGGAACAGCT-CGACACTCC 241
| ||||||||||| |||||||||| || ||||||||||||||||||| | |||||||
Sbjct 288 -TGTTAACTGCATTGCGGTTGCTTCGTTCGTATTTTACTGAGGAACAGCTAC-ACACTCC 345
Query 242 TGTGTTAGACTTCTTTAAAGAGAACCTTCCGGATTTGTCGATATCGAGAAACGAAGAAAC 301
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 346 TGTGTTAGACTTCTTTAAAGAGAATCTTCCGGATTTATCGATATCGAGAAACGAAGAAAC 405
Query 302 TGGGGAGATTGAGTTAAAGTGGAAAGATGAAAATGGTGATTCATTCGCAGGAAATGCGAA 361
||||||||||||||||||||||| ||| |||||||||||||| || || ||||||| |||
Sbjct 406 TGGGGAGATTGAGTTAAAGTGGAGAGACGAAAATGGTGATTCGTTTGCTGGAAATGAGAA 465
Query 362 TGGCGTTGACATGAATTATTCTATTTT-AAAGCGCTTGTCGATGCGTTTT-CCTGATTTA 419
||||||||||||||||||||||||||| ||| |||||||||||||||||| || ||||||
Sbjct 466 TGGCGTTGACATGAATTATTCTATTTTGAAA-CGCTTGTCGATGCGTTTTACC-GATTTA 523
Query 420 TATAGTAGATCATCTCTTGGTGGCTATGATTTACCTGATAACGTGAAAGCAAACCTGTTA 479
|| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 524 TACAGTAGGTCATCTCTTGGTGGCTATGATTTACCTGACAACGTGAAAGCTAACCTGTTA 583
Query 480 GGAACTGATAACCCACTGCTCGATAATCTTGTCTTTCAGGGGACATCTGAGAACCAAATG 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 GGAACTGATAACCCACAGCTCGATAATCTTGTCTTTCAGGGGACATCTGAGAACCAAATG 643
Query 540 CTTGCAAGCCATGATGCTTTTCAGACTCCTGGGGTGAATGGGCAAAGACTCTCTTTTGGA 599
||| || |||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 644 CTTCCAGGCCATGATGCTTTTCAGACTCCTGGGGTTAATGGGCAAAGACTTTCTTTTGGA 703
Query 600 ATGACACCAAAGACTCGGAGGCTACCAAAACCTGGAGAGATGATGCTCTCTGTGCATGGC 659
||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 704 ATGACTCCAAAGACTCTGAGGCTACCAAAAGCTGGAGAGATGATGCTCTCTGTGCATGGC 763
Query 660 TCTCCTTTGGGGGTCTACAAAGAAGACCACAACATGGGAGCTATAAATGAGGAAAACAGT 719
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 764 TCTCCTTTGGGGGTCTACAAAGAAGACCACAACATGGGAGCAATAAATGAGGAAAACAGT 823
Query 720 TGAAAAGCTTCAAAGATTCAGAC 742
||||||||||||| |||||||||
Sbjct 824 TGAAAAGCTTCAACGATTCAGAC 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5