BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943961
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39670.1 | Symbols: | Glycolipid transfer protein (GLTP) fa... 1064 0.0
> AT4G39670.1 | Symbols: | Glycolipid transfer protein (GLTP)
family protein | chr4:18410172-18411000 FORWARD LENGTH=829
Length=829
Score = 1064 bits (576), Expect = 0.0
Identities = 673/719 (94%), Gaps = 9/719 (1%)
Strand=Plus/Plus
Query 21 ATGgaagaagaagaagaagatcaggaagaagaagaCATGTTCGAAGATGCCGTGTGTACC 80
||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAAGCAGAAGTAGAAG---AGGAAGAAGAAGACATGTTCGAAGACGCCGTGTGTACC 57
Query 81 ACGCCAGCCAGAGTCAACACGCCTTTGTCCGTAATCACAGAGGCCTTCGAAGATCTCGCA 140
|||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 58 ACGCAAGCAAGAGTCAACACGCCATTGTCCGTAATCACAGAGGCCTTCGAAGATCTCGCG 117
Query 141 GATCTTCTGAAACCGCAACGATCTGATGAGATCGAAGAAGACGAAGACGGATTAAGGCTT 200
||||| |||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 118 GATCTGGTGAAACCGCAACGATCTGATGAGATCGATGAAGAC---GA---ATTAAGGCTT 171
Query 201 GGTGATTTCTGCAGTGCGTGTACTCATGTCTCTGTTCTCTTCAATTGTCTTGGATTCGCT 260
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 172 GATGATTTCTGCAGTGCGTGTACTCACGTCTCTGTTCTCTTCAATTGTCTTGGATTCGCT 231
Query 261 TTCAAATTTGCGGAAATGGAGTACATCGCCAAGGTTAAGGATTTGGTTGAGGCGTCAAAA 320
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 232 TTCAAATTTGCGGAAATGGAGTACATCGCCAAGGTTAAGGATTTGGTGGAAGCGTCGAAA 291
Query 321 ACGTTCGACACGTTACAGAACATTCTTGATCTAGACGTGGAGAAAGAAACGGTTAAAACA 380
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 292 ACGTTCGAAACGTTACACAACATTCTTGACCTAGACGTGGAGAAAGAAACGGTTAAAACA 351
Query 381 CCGGGAAGCCATTCACGTAACCTAAGACGTGTTAGACAAGGTTTAGATCTGATCCGAGCC 440
||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 352 CCGGGGAGCCATTCGCGTAACCTAAGACGTGTGAGACAAGGTTTAGATCTGATCCGAGCC 411
Query 441 ATCTTTGAACAATTCTTGATCGCTGATGACTATTCCTTGAAAGACGCTGCGACCACGGCT 500
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 412 ATCTTTGAACAATTTTTGATCGCAGATGACTATTCGTTGAAAGACGCTGCGACAACGGCT 471
Query 501 TACACCGAAGTCTGCGCACCGTTCCATACATGGGCAGTTAGGACCGCGGTTTACGCCGGA 560
||||| ||||| || |||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 472 TACACGGAAGTGTGTGCACCGTTCCATACGTGGGCCGTTAGAACCGCGGTTTACGCCGGA 531
Query 561 ATGTATACACTTCCGACGAGGGATCAACTTCTCTTACGGCTCAATGAAACTGATCAATCG 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ATGTATACACTTCCGACGAGGGATCAACTTCTCTTACGGCTCAATGAAACTGATCAATCG 591
Query 621 GTTGAGAAGAACATGAGGAGGTACATGGAAGCATCGCGACCTATCATAGAATATATTGAC 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GTTGAGAAGAACATGAGGAGGTACATGGAAGCATCGCGACCTATCATAGAATATATTGAC 651
Query 681 AAGCTTTACATTGAAAGGAACATTAAACTCGATTGGTAAATTTTTTGTTCTACATTAAG 739
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||| |||
Sbjct 652 AAGCTTTACATTGAAAGGAATATTAAACTCGATTGGTAAAAAATTTGTTCTGCATCAAG 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35867180958
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5