BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943964
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39680.1 | Symbols: | SAP domain-containing protein | chr4:... 2874 0.0
> AT4G39680.1 | Symbols: | SAP domain-containing protein | chr4:18414306-18417530
REVERSE LENGTH=2466
Length=2466
Score = 2874 bits (1556), Expect = 0.0
Identities = 1837/1964 (94%), Gaps = 54/1964 (3%)
Strand=Plus/Plus
Query 6 CTCTCATAAGCTAAGATGTCGTCATCGCCTTTTCCAGTCTTGGACAACCGACCAATTGAT 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CTCTCATAAGCTAAGATGTCGTCATCGCCTTTTCCAGTCTTGGACAACCGACCAATTGAT 311
Query 66 AAGTGGAAGGTTACAGAATTGAAAGAAGAGCTTAAAAGACGGAGACTAACAACAAGAGGC 125
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AAGTGGAAGGTTACGGAATTGAAAGAAGAGCTTAAAAGACGGAGACTAACAACAAGAGGC 371
Query 126 TTGAAGGAGGAATTGGTTAGGCGTCTTGATGAAGCACTTCGTGTTGAGCAAGAAGAGTCT 185
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 372 TTGAAGGAGGAATTGGTTAGGCGTCTTGATGAAGCACTTCGTGCTGAGCAAGAAGAGTCT 431
Query 186 GAAAGAATC-A-A---C-A--G-TGCTGCTGCTGAGAAAGCCAATCAAGAGGCTCATATG 236
||||| ||| | | | | | |||||||||||| ||||||||||||||| |||| |||
Sbjct 432 GAAAGGATCAATAGTGCTACTGTTGCTGCTGCTGAAAAAGCCAATCAAGAGCCTCAGATG 491
Query 237 TTTCCTGTTACTGGAGGCGACGTCAATGTTACACCAGATCGTAATCAAACCACTCCTGTT 296
|||||||||||| || | | | ||||||||||||||||||||||||
Sbjct 492 TTTCCTGTTACT---------GT--A-GGT------GATCGTAATCAAACCACTCCTGTT 533
Query 297 ACTCCTGTTGAAGCAGCATTTAGCACTGAGACAACTCCTGTTGCAGCTGAGAAAACCCCA 356
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 534 ACTCCTGTTGAAGCGGCATTTAGCACTGAGACAACTCCTGTTACAGCTGAGAAAACCCCA 593
Query 357 GAACCAATTCAGGCTAAGACAACAACTGAAGCTTCAGCTGGTGTTGAAACAACACCAACC 416
||||||| |||| | |||| ||||||||||||||||||||||||||| || |||||| ||
Sbjct 594 GAACCAACTCAGACCAAGATAACAACTGAAGCTTCAGCTGGTGTTGAGACTACACCAGCC 653
Query 417 CCAGTATTTTCAAAACCAGAGGTTAACCCGGTGCCATTCGCTAGTGATGAAG-T-----T 470
|| || |||||| |||||||||||||| | |||||||||||||||||||||| |
Sbjct 654 CCGGTGTTTTCAGAACCAGAGGTTAACGCTGTGCCATTCGCTAGTGATGAAGATGAGAAA 713
Query 471 GAGAAAGTTGATGATGTTAGAGACATAGCTGGTCTTGATAGTTCAGTGGTTGCATGTGAT 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 714 GAGAAAGTTGATGATGTTAGAGACATAGCTGGTCTTGATAGTTCAGTGGTTGCACGTGAT 773
Query 531 GCAGCAGTTGTGGACGTGGCCTCTAGTGAGCACAAATCTGAGAATAAGGAACCATTTAGT 590
|||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 774 GCAGCAGTTGTGCAAGTGGCGTCTAGTGAGCACAAATCTGAGAATAATGAACCATTTAGT 833
Query 591 GGGTTGGATGGTGGGGATTCTAAGGCTCAACCATCAGAGGCAGTGCTTGAAAAATCTGCT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GGGTTGGATGGTGGGGATTCTAAGGCTCAACCATCAGAGGCAGTGCTTGAAAAATCTGCT 893
Query 651 ATGAACAACCAGGTATCTGAGGTCATCCCCATTACAGGGTTTGAGGTAAAATCTGATTGT 710
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 894 ATGTACAACCAGGTATCTGAGGTCATCCCCGTTACAGGGTTTGAGGTAAAATCTGATTGT 953
Query 711 ATTTCTACTGATTCTGTGTCAAATAATGAAAAAATAGAACTAAAGGATAACAAAATTGCT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 ATTTCTACTGATTCTGTGTCAAATAATGAAAAAATAGAACTAAAGGATAACAAAATTGCT 1013
Query 771 GATAATGTCAAATTAGAACAAAATGTTAATAAGTTCCAAGAGCCATCAACAGTCGTTGGC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GATAATGTCAAATTAGAACAAAATGTTAATAAGTTCCAAGAGCCATCAACAGTCGTTGGC 1073
Query 831 GAATCGCATCCAATGGATGTCGAGGAGCCACTTGAGCAGAAGAAATCTGTTGGAGGTGGA 890
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1074 GAATCGCATCCAATGGATGTCGAGGAGCCACTTGAGCAGAAGACATCTGTTGGAGGTGGG 1133
Query 891 GATGACAGCAATGCTGCAAATGCAGATATGACCAAAGAAAATAATATTATCGATGCAGGC 950
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1134 GATGACAGCAATGCTGCAAACGCAGATATGATCAAAGAAAATAATATTATCGATGCAGGC 1193
Query 951 GACTCAGAAAAGTTGAATTTAGATAGAAGTTCTGGTGATGAGTCTATGGAGGATGAGCCA 1010
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GACTCAGAAAAGTTGAATTTAGATAGAAGTTCTGGTGATGAGTCTATGGAGGATGAGCCG 1253
Query 1011 GAGACAAAGCAAACTGAGTCAATTACATCTGTTGATAAGAGTG-AGAAAATTGAAACCCT 1069
|||||||||||| | |||||||||||||||| ||||||||||| | |||||||||| ||
Sbjct 1254 GAGACAAAGCAATCCGAGTCAATTACATCTGATGATAAGAGTGCA-AAAATTGAAATGCT 1312
Query 1070 TTCTAAGGAGGAAAGCCGTGCTGATAGGGATGCTGGGAAAGGGAAAGCCCCTGAAAATAA 1129
|||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct 1313 TTCTAAGGAGGAAAGCCGTGCTGATATGGATGCGGGGAAAGGGAAATCCCCTGAAAATAA 1372
Query 1130 AAGTCATCCACTGGTGGCTTCTGACAAAAGAAAGCTTCCTGCTAATGATCAAGAAGCTGT 1189
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 AAGTCACCCACTGGTGGCTTCTGACAAAAGAAAGCTTCCTGCTAATGATCAAGAAGCTGT 1432
Query 1190 TGGAAACAATGAGCCTGCAAAGAGGCAACGCCGATGGAACTCTGAA-AGTATTAAAGTTC 1248
|||||||||||| ||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 1433 TGGAAACAATGAACCTGCAAAGAGGC---GCCGATGGAACTCT-AATAGTATTAAAGTTC 1488
Query 1249 CTGAAGCACAGACCACGAATAGTGCTACACCCACTACAACACCAAGGTCGACCGGTCTGA 1308
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1489 CTGAAGCACAGATCACTAATAGTGCTACACCCACTACAACACCAAGGTCGACTGGTCTGA 1548
Query 1309 AGCGCGACTTCTCAAGATCTGACTCTTCGGTTAGTGAGGATGGACCCAAGGAACGCGTGG 1368
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1549 AGCGCGACTTCTCAAGGTCTGACTCTTCGGTTAGTGAAGATGGACCCAAGGAACGTGTGG 1608
Query 1369 TTCCTCCATCTCCAAAGGAGCCTACAAATTCCCTCAGGATTGATCGTTTCCTAAGGCCGT 1428
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1609 TTCCTCCATCTCCAAAGGAGCCTACAAATTCCCTCAGGATTGACCGTTTCCTTAGGCCGT 1668
Query 1429 TCACACTGAAAGCTGTTCAGGAACTCCTGGGTAAAACCGGAAACGTCACTAGTTTCTGGA 1488
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1669 TCACACTGAAAGCTGTTCAGGAGCTCCTGGGTAAAACCGGAAATGTCACTAGTTTCTGGA 1728
Query 1489 TGGACCACATTAAGACCCATTGCTATGTATCATATCCCTCTGTTGAAGAAGCTGCAGCAA 1548
||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||
Sbjct 1729 TGGACCACATTAAGACCCACTGCTATGTATCGTATCCCTCGGTTGAAGAAGCAGCAGCAA 1788
Query 1549 CAAGAGAAGCAGTGTATAACCTCCAATGGCCACCTAATGGAGGCCGCCATCTGATAGCTG 1608
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1789 CAAGAGAAGCAGTGTATAACCTCCAGTGGCCACCTAATGGAGGCCGCCATCTGATAGCTG 1848
Query 1609 AATTTGTCAGACCAGAAGAAGTAAAAGCAAAACTGGAAGCTCCTCTACCTCCTCCTCCTC 1668
||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1849 AATTTGTTAGAGCAGAAGAAGTAAAAGAAAAACTGGAAGCTCCTCTGCCTCCTC------ 1902
Query 1669 AGCCTCAGCATCAGCATCAGCCACAAGCTCAGACTCTTTCGCGGCCACCTCCAACCGCTC 1728
||||||||||||||| || | | | ||||||||||||||||||||||||||||| ||||
Sbjct 1903 AGCCTCAGCATCAGC--CA-C-A-A-GCTCAGACTCTTTCGCGGCCACCTCCAACTGCTC 1956
Query 1729 TTCCACCACCACCACCTCTGGCCAAACCACCTC-CTGTCGTAGAACGTCTTCCTCTTCCT 1787
||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |||
Sbjct 1957 TTCCACCACCACCACCTCTGGCCAAACCACCTCAC-GTTGTAGAACGTCTTCCTCTGCCT 2015
Query 1788 CCCCCTCCTCCTCTAGTCTCTGAGGAGCAAGAACCTCCCATTGTCACTCTTGATGATCTT 1847
|||||||||||| ||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 2016 CCCCCTCCTCCTATAGCCCCTGAGGAACAAGAACCTCCCATTGTCACTCTTGATGATCTA 2075
Query 1848 TTCAAGAAGACAAAAGCAATCCCCAGGATATATTACTTACCCTTGTCAGAGGAGCAAGTT 1907
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 TTCAAGAAGACAAAAGCGATCCCCAGGATATATTACTTACCCTTGTCAGAGGAGCAAGTT 2135
Query 1908 GCAGCTAAACTTGCAGCTAATAATAACAAGTGATCTTGCTGGTT 1951
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2136 GCAGCTAAACTTGCAGCGAATAATAACAAGTGATCTTGCTGGTT 2179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97087854030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5