BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943974
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39760.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1544 0.0
> AT4G39760.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18443679-18444788 FORWARD LENGTH=1110
Length=1110
Score = 1544 bits (836), Expect = 0.0
Identities = 1020/1110 (92%), Gaps = 7/1110 (1%)
Strand=Plus/Plus
Query 26 ATGATCTCCCAAGAAGAAGTACCCCAGAGTACAAACCATTCTCTGTCATTTTCATCACTA 85
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATCTCCCAAGAAGAAGTACCGCAGAGTACAAACCATTCTCTGTCATTTTCATCACTA 60
Query 86 CCGCACGAAATCGCTGTGAGTTGCTTAGCCCGCGTATCGGGATCGTACTACCCGAAACTT 145
|| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 CCCCACGAAATCGTTGTGAGTTGCTTAGCCCGCGTCTCGGGATCGTACTACCCGAAACTC 120
Query 146 TGCCTTGTCTCCAAGCAATTCCGCTCAATCATCTTATCAAATGAACTCTACAAGGCTAGA 205
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 TGCCTCGTCTCCAAGCAATTCCGCTCAATCATCTTATCAAATGAAATCTACAAGGCTAGA 180
Query 206 ACTCAACTTGGAACCAAAGAAAACCGCCTCTACGTATGGCTAAAATTGCCTACTCGTAGT 265
| || ||||||||||||||||||||||||| ||| |||||||| ||||| |||||| |
Sbjct 181 TCCCACCTTGGAACCAAAGAAAACCGCCTCTTCGTTTGGCTAAAGTTGCCCACTCGTTCT 240
Query 266 TATCCTTCTTGGTTCACCCTTTGGATAAGGCCTAAACAAACCCTAACCAACGATGGCCCG 325
||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 241 TATCCTTCTTGGTTCGCCCTTTGGATAAAGCCTAATGAAACCCTGACCAACGATGGCCCG 300
Query 326 ATCAAGAAAAAGTCTACTGGAAATTTACTGGTGTCGTTGCCTTCTTCGTATAATTATCAA 385
|||||||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 301 ATCAAGAAGCAGTCTACTGGAAATCTACTGGTGCCGTTGCCTTGTTCGTATAATTATCAA 360
Query 386 GTAGTAGTACCCTCAGTGATAGTTGGTTCAGAAACCTACATAATCGGTGGATAC-A--AT 442
||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||
Sbjct 361 GTACTAGTACCCTCAGTGATAGTTGGTTCAGAAACATACATAGTCGGTGGATACGATGAT 420
Query 443 GTTCCTTCTTCCTCCGTGTGGGTCTATAAGAATGGCAAGATTCACACCTTATGTAAAGCT 502
| || |||||| ||||||||| ||||||| ||||| ||||| ||||||||| ||||| |
Sbjct 421 GCTCTTTCTTCATCCGTGTGGTTCTATAAAAATGGGAAGATCCACACCTTAAGTAAATCC 480
Query 503 CCTAGAATGTCCGTGGCACGGATTAACGCAGTAATTGTTGGACAGTATCCTAAAATATAT 562
||||| ||||| ||||| |||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 481 CCTAGTATGTCGGTGGCTCGGATTGACGCAGTAGTTGTTGGACAGTATCCTAACATATAT 540
Query 563 GTAATGGGAGGGTGTGATTCAGATGAATCCATGAATTGGGGTGAGGTTTTCAACATAAAG 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTAATGGGAGGGTGTGATTCAGATGAATCCATGAATTGGGGTGAGGTTTTCAACATAAAG 600
Query 623 ACTCAAACGTGGGAACCTTTGCCAGACCCTGGTCCAGATGTCCGTGGCCATTTGGTTAGG 682
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 601 ACTCAAACGTGGGAACCTTTGCCAGACCCTGGTCCAGAGGTTCGTGGCCAGTTGGTTAGG 660
Query 683 AAAATGAAAATGTATCAGAAAAACCTTTACGTTAGTAGCGAGAAGAAGGATTATATATAT 742
|||||||||||| | |||||||| | ||||||||||| || |||||||||||||| |||
Sbjct 661 AAAATGAAAATGCAGAAGAAAAACGTCTACGTTAGTAGTGAAAAGAAGGATTATATTTAT 720
Query 743 GATACTCAAGAACGTAGATGGGATGTTACAGAGGTACTCTTAAATTGCAGTTGGTGTGTG 802
|||||| ||||||||| |||| | |||||||||| | |||| |||| |||||||||||||
Sbjct 721 GATACTGAAGAACGTACATGGAAAGTTACAGAGGCAGTCTTTAATTTCAGTTGGTGTGTG 780
Query 803 ATAGAGAAAGTACGCTACATTTATTACAACAAAAACTGCTGGTGGCTTGACACAAAGTCT 862
|||||||||||||||||||| ||||| ||||| || || |||||||||||||||||||||
Sbjct 781 ATAGAGAAAGTACGCTACATATATTATAACAAGAATTGTTGGTGGCTTGACACAAAGTCT 840
Query 863 AAAGAGTGGAGAACGATCAAAGGTTTGGATTTTCTAAATAAATTCCGTGAAACAGATAGG 922
||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 841 AAAGACTGGAGAAAGATCAAAGGTTTGGATTTTCTAAATAAGTTTCGTGAAACAGATAGG 900
Query 923 GTTGAAATAGTTAACTTTGG-TGGGAAACTCGTAATGGTATGGGACAGATTTACGCTATC 981
|||||||||||||||| || ||| |||||||||||| ||||||||||||||||||||||
Sbjct 901 ATTGAAATAGTTAACTT-GGATGGCAAACTCGTAATGATATGGGACAGATTTACGCTATC 959
Query 982 TAAACGAAACAAGAAAATTTGGTGTGCGATGATTGCGCTTGAAAAGTCTCATGGAGGTGA 1041
||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 960 TAAACGAAACAAGAAGATTTGGTGTGCGATGATTGCGCTTGAAAAGTGTCAAGGATGTGA 1019
Query 1042 AGAAATTTGGGGAAAGATTGAATGGATTGATGATGTGCTTATGGTCCCTTTATCATATA- 1100
|| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1020 AGGAATTTGGGGCAAGATTGAATGGATTGGTGATGTGCTTATGGTCCCTTTATCATATAG 1079
Query 1101 CTTTCTTGGATTGTATGGTCATATCCATAT 1130
||| ||||||||||||||||||||||||||
Sbjct 1080 CTT-CTTGGATTGTATGGTCATATCCATAT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5