BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943986

Length=274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G57610.1 | Symbols:  | Protein of unknown function (DUF607) ...   403    4e-112


> AT1G57610.1 | Symbols:  | Protein of unknown function (DUF607) 
| chr1:21337235-21338656 REVERSE LENGTH=1340
Length=1340

 Score =  403 bits (218),  Expect = 4e-112
 Identities = 246/260 (95%), Gaps = 0/260 (0%)
 Strand=Plus/Plus

Query  1     TGGGTTATGCTTATTTCTTTATGACTTCAAGAGACCCAACGTATCAAGATTTCATGAAAA  60
             ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct  873   TGGGTTATGCTTATTTCTTGATGACTTCTAGAGATCCAACGTATCAAGATTTCATGAAAA  932

Query  61    AGTTGTTTCTTTCTAGGCAGAGGAAGTTGCTTAAGAGTCATAAGTTTGATGTTGAGAGGT  120
              |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  933   GGTTGTTTCTTTCCAGGCAGAGGAAGTTGCTTAAGAGTCATAAGTTTGATGCTGAGAGGT  992

Query  121   TTAAGGAACTTGAGAATAAGTGGAAGATAATGTCTTGCTCTTCATCTTCGTGCCACGCAA  180
             |||| ||||| ||||| ||||||||||||| |||||||||||| |||||||||||||| |
Sbjct  993   TTAAAGAACTGGAGAACAAGTGGAAGATAACGTCTTGCTCTTCTTCTTCGTGCCACGCTA  1052

Query  181   ATGCATCGATTCGGAATCGTGTTGGTGTTGATCTTGATTTGGAGGATTCTTTGCAGAGTC  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1053  ATGCATCGATTCGGAATCGTGTTGGTGTTGATCTTGATTTGGAGGATTCTTTGCAGAGTC  1112

Query  241   GTCATAGAGATTGATTGGTT  260
              ||| |||||||||||||||
Sbjct  1113  ATCACAGAGATTGATTGGTT  1132



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12566937250


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5