BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943987
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1491 0.0
> AT4G39860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G22270.1);
Has 152 Blast hits to 146 proteins in 19 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:18499753-18501642
FORWARD LENGTH=1226
Length=1226
Score = 1491 bits (807), Expect = 0.0
Identities = 885/922 (96%), Gaps = 8/922 (1%)
Strand=Plus/Plus
Query 1 AGAAGAAAGAGAAAATAAA-A-ATGGAGAGAAACACGCCGGTGAGAAACCCTCACACTTC 58
||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 135 AGAAGAAAGAGAAAAAAAAGAGATGGAGAGAAACACGCCGGTGAGAAACCCTCACACTTC 194
Query 59 CACCGCCGATCTGCTTTCTTGGTCGGAAA---CTCCTCCTCCTCACCACTCAACCTCTTC 115
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 195 CACCGCCGATCTGCTTTCTTGGTCGGAAACTCCTCCTCCTCCTCACCACTCAACCCCTTC 254
Query 116 CGCCGCTCGTTCTCACCAGCCGTCCGATGGAATCAGCAAGATTCTCGGCGGTGGTCAGAT 175
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 255 CGCCGCTCGTTCTCACCAGCCGTCCGATGGAATCAGCAAGATTCTAGGCGGTGGTCAGAT 314
Query 176 CACCGATGAGGAAGCTCAGTCGCTTAATAAGCTGAAGAATTGTTCAGGGTACAAGTTAAA 235
||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 315 CACAGATGAAGAAGCCCAGTCGCTTAATAAGCTAAAGAATTGTTCAGGGTACAAGTTAAA 374
Query 236 AGAGATGACTGGTAGTGGCATATTTAATGATAAGGGAAAAGTTGGGTCTGAATCCGATG- 294
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 375 AGAGATGACTGGTAGTGGCATATTTACTGATAAGGGAAAAGTTGGATCTGAATCCGATGC 434
Query 295 --CTACTGATCCAAAGACTGGACTCCGTTACTATCAGCAGACGCTGAATGGAATGAGTCA 352
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 435 TACTACTGATCCAAAGACTGGACTCCGTTACTATCAGCAGACTCTGAATGGAATGAGTCA 494
Query 353 GATATCTTTCAGTGCTGACGGTAATGTTTCCCCGAAGAAACCAACCACTTTAACCGAGGT 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 GATATCTTTCAGTGCTGACGGTAATGTTTCCCCGAAGAAACCAACCACTTTAACCGAGGT 554
Query 413 TGCAAAGCAAAGAGAGCTGAGCGGGAACTTGCTAACCGAGGCAGACTTAAAGAGCAACAA 472
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 555 TGCAAAGCAAAGAGAGCTGAGCGGGAACTTGCTAACCGAGGCGGATTTAAAGAGCAACAA 614
Query 473 GCAGATATCAAGTGCTAAGATCGAAGAGATCAGCGGTCATGACATCTTTGGACCTCCATC 532
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 615 GCAGATATCAAGTGCTAAGATTGAAGAGATCAGCGGTCATGACATCTTTGCACCTCCATC 674
Query 533 TGAGATCCAGCCTCGATCTTTGGTTGCTGCACAGCAAGAAGCTAGAGGTAACAGAGACAT 592
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TGAGATTCAGCCTCGATCTTTGGTTGCTGCACAGCAAGAAGCTAGAGGTAACAGAGACAT 734
Query 593 GGGAGAGCCTGCACCAAGGAACTTACGCACTTCTGTTAAAGTTTCCAATCCTGCAGGAGG 652
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 735 GGGAGAGCCTGCACCAAGGAACTTACGCACTTCTGTTAAAGTTTCCAACCCTGCAGGAGG 794
Query 653 ACAAAGCAACATACTATTCAGTGAAGAACCTGTGGTGAAGACATCAAAGAAGATACATAA 712
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 795 ACAAAGCAACATACTATTCAGTGAAGAACCTGTTGTGAAGACATCAAAGAAGATACATAA 854
Query 713 CCAGAAGTTTCAGGAACTCACAGGCAACGGCATTTTCAAAGGTGATGAATCACCTGGTAC 772
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 855 CCAGAAGTTTCAGGAACTCACAGGCAACGGCATTTTCAAAGGCGATGAATCACCTGGTAG 914
Query 773 TGCGGATAAGCAGTTAAGCTCAGCTAAACTCCGGGAAATGAGTGGGAACAACATTTTCGC 832
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 915 TGCGGATAAGCAGTTAAGCTCAGCTAAACTCCGTGAAATGAGCGGAAACAACATTTTCGC 974
Query 833 AGACGGGAAGTCAGAATCCCGAGACTACTTTGGTGGTGTGAGGAAGCCCCCCGGTGGTGA 892
|||||| |||||||| ||||||||||||||||| || |||||||| || ||||| |||||
Sbjct 975 AGACGGAAAGTCAGAGTCCCGAGACTACTTTGGCGGCGTGAGGAAACCTCCCGGAGGTGA 1034
Query 893 AAGCAGCATTTCATTGGTCTAA 914
||||||||||||||||||||||
Sbjct 1035 AAGCAGCATTTCATTGGTCTAA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5