BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943987 Length=934 Score E Sequences producing significant alignments: (Bits) Value AT4G39860.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1491 0.0 > AT4G39860.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:18499753-18501642 FORWARD LENGTH=1226 Length=1226 Score = 1491 bits (807), Expect = 0.0 Identities = 885/922 (96%), Gaps = 8/922 (1%) Strand=Plus/Plus Query 1 AGAAGAAAGAGAAAATAAA-A-ATGGAGAGAAACACGCCGGTGAGAAACCCTCACACTTC 58 ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||| Sbjct 135 AGAAGAAAGAGAAAAAAAAGAGATGGAGAGAAACACGCCGGTGAGAAACCCTCACACTTC 194 Query 59 CACCGCCGATCTGCTTTCTTGGTCGGAAA---CTCCTCCTCCTCACCACTCAACCTCTTC 115 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 195 CACCGCCGATCTGCTTTCTTGGTCGGAAACTCCTCCTCCTCCTCACCACTCAACCCCTTC 254 Query 116 CGCCGCTCGTTCTCACCAGCCGTCCGATGGAATCAGCAAGATTCTCGGCGGTGGTCAGAT 175 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 255 CGCCGCTCGTTCTCACCAGCCGTCCGATGGAATCAGCAAGATTCTAGGCGGTGGTCAGAT 314 Query 176 CACCGATGAGGAAGCTCAGTCGCTTAATAAGCTGAAGAATTGTTCAGGGTACAAGTTAAA 235 ||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 315 CACAGATGAAGAAGCCCAGTCGCTTAATAAGCTAAAGAATTGTTCAGGGTACAAGTTAAA 374 Query 236 AGAGATGACTGGTAGTGGCATATTTAATGATAAGGGAAAAGTTGGGTCTGAATCCGATG- 294 |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 375 AGAGATGACTGGTAGTGGCATATTTACTGATAAGGGAAAAGTTGGATCTGAATCCGATGC 434 Query 295 --CTACTGATCCAAAGACTGGACTCCGTTACTATCAGCAGACGCTGAATGGAATGAGTCA 352 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 435 TACTACTGATCCAAAGACTGGACTCCGTTACTATCAGCAGACTCTGAATGGAATGAGTCA 494 Query 353 GATATCTTTCAGTGCTGACGGTAATGTTTCCCCGAAGAAACCAACCACTTTAACCGAGGT 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 495 GATATCTTTCAGTGCTGACGGTAATGTTTCCCCGAAGAAACCAACCACTTTAACCGAGGT 554 Query 413 TGCAAAGCAAAGAGAGCTGAGCGGGAACTTGCTAACCGAGGCAGACTTAAAGAGCAACAA 472 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 555 TGCAAAGCAAAGAGAGCTGAGCGGGAACTTGCTAACCGAGGCGGATTTAAAGAGCAACAA 614 Query 473 GCAGATATCAAGTGCTAAGATCGAAGAGATCAGCGGTCATGACATCTTTGGACCTCCATC 532 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 615 GCAGATATCAAGTGCTAAGATTGAAGAGATCAGCGGTCATGACATCTTTGCACCTCCATC 674 Query 533 TGAGATCCAGCCTCGATCTTTGGTTGCTGCACAGCAAGAAGCTAGAGGTAACAGAGACAT 592 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 675 TGAGATTCAGCCTCGATCTTTGGTTGCTGCACAGCAAGAAGCTAGAGGTAACAGAGACAT 734 Query 593 GGGAGAGCCTGCACCAAGGAACTTACGCACTTCTGTTAAAGTTTCCAATCCTGCAGGAGG 652 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 735 GGGAGAGCCTGCACCAAGGAACTTACGCACTTCTGTTAAAGTTTCCAACCCTGCAGGAGG 794 Query 653 ACAAAGCAACATACTATTCAGTGAAGAACCTGTGGTGAAGACATCAAAGAAGATACATAA 712 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 795 ACAAAGCAACATACTATTCAGTGAAGAACCTGTTGTGAAGACATCAAAGAAGATACATAA 854 Query 713 CCAGAAGTTTCAGGAACTCACAGGCAACGGCATTTTCAAAGGTGATGAATCACCTGGTAC 772 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 855 CCAGAAGTTTCAGGAACTCACAGGCAACGGCATTTTCAAAGGCGATGAATCACCTGGTAG 914 Query 773 TGCGGATAAGCAGTTAAGCTCAGCTAAACTCCGGGAAATGAGTGGGAACAACATTTTCGC 832 ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct 915 TGCGGATAAGCAGTTAAGCTCAGCTAAACTCCGTGAAATGAGCGGAAACAACATTTTCGC 974 Query 833 AGACGGGAAGTCAGAATCCCGAGACTACTTTGGTGGTGTGAGGAAGCCCCCCGGTGGTGA 892 |||||| |||||||| ||||||||||||||||| || |||||||| || ||||| ||||| Sbjct 975 AGACGGAAAGTCAGAGTCCCGAGACTACTTTGGCGGCGTGAGGAAACCTCCCGGAGGTGA 1034 Query 893 AAGCAGCATTTCATTGGTCTAA 914 |||||||||||||||||||||| Sbjct 1035 AAGCAGCATTTCATTGGTCTAA 1056 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45662839623 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5