BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943990
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39890.1 | Symbols: AtRABH1c, RABH1c | RAB GTPase homolog H1... 1096 0.0
AT2G22290.1 | Symbols: ATRABH1D, ATRAB-H1D, RAB-H1D, ATRAB6, RA... 503 1e-141
> AT4G39890.1 | Symbols: AtRABH1c, RABH1c | RAB GTPase homolog
H1C | chr4:18505962-18507586 FORWARD LENGTH=922
Length=922
Score = 1096 bits (593), Expect = 0.0
Identities = 650/677 (96%), Gaps = 6/677 (1%)
Strand=Plus/Plus
Query 12 GAACCGAAC--ATGGCGGCGGTTTCACCTTTGGCAAAGTTTAAACTGGTGTTCTTAGGAG 69
|||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GAACGGAACATATGGCTTCGGTTTCACCTTTGGCAAAGTTTAAACTGGTGTTCTTAGGAG 199
Query 70 ATCAATCTGTCGGAAAAACCAGCATCATCACTCGTTTCATGTATGACAAATTCGACACCA 129
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 ACCAATCTGTCGGAAAAACCAGCATCATCACTCGTTTCATGTATGACAAATTCGACACCA 259
Query 130 CTTACCAGCCTACCATCGGAATCGATTTTCTTTCGAAAACAATGTACCTCGAAGATCGAA 189
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 260 CGTACCAGCCTACCATTGGAATCGATTTTCTATCGAAAACAATGTACCTCGAAGATCGAA 319
Query 190 CAGTTCGTTTGCAGCTATGGGATACGGCTGGACAAGAAAGATTCAGGAGTCTAATCCCAA 249
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 320 CAGTTCGTTTGCAGCTATGGGATACTGCTGGACAAGAAAGATTCAGGAGTCTAATCCCAA 379
Query 250 GTTACATCAGAGATTCTTCTGTTGCCATTGTTGTATATGATGTATCCAATAGGCAAACGT 309
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 380 GTTACATCAGAGATTCTTCTGTTGCCATTGTTGTATACGATGTATCCAATAGGCAAACGT 439
Query 310 TTCTGAATACCACGAAATGGATTGAGGATGTACACAGAGAAAGAGGTCAAAGCAATGTTA 369
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 440 TTCTGAATACCTCGAAATGGATTGAGGATGTTCACAGAGAAAGAGGTCAAAGCAATGTTA 499
Query 370 TTATTGTTCTTGTTGGAAACAAAACTGATCTTGTTGAAAAAAGGCAAGTATCAATCAGTG 429
| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 500 TCATCGTTCTTGTTGGAAACAAAACTGATCTTGTTGAAAAACGGCAAGTATCAATCAGTG 559
Query 430 AAGGGGAAGACAAGGGTAAAGAGTATGGAGTGATGTTCATTGAGACCAGTGCCAAAGAAA 489
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 AAGGAGAAGACAAGGGTAAAGAGTATGGAGTGATGTTCATTGAGACCAGTGCCAAAGAAA 619
Query 490 ATTTCAACATTAAGGCTTTGTTCCGGAAGATTGCTGCAGCTTTA-CCGGGTGTGGACACA 548
| |||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||
Sbjct 620 ACTTCAACATTAAGGCTTTGTTCCGGAAGATTGCTGCAGCTTTACCCGGG-GTAGACTCA 678
Query 549 TATTCATTGGCAACGAAATCCGAGGACATGGTTGATGTGAATCTAAAGACCACTTCAAAT 608
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 679 TATTCATTGGCAACAAAATCAGATGACATGGTTGATGTGAATCTAAAGACCACTTCAAAT 738
Query 609 TCATCACAAGGTGAGCAACAAGGAGGAGCAGGTGGTGGTGGAGGCTGTTCTTGTTGATTC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TCATCACAAGGTGAGCAACAAGGAGGAGCAGGTGGTGGTGGAGGCTGTTCTTGTTGATTC 798
Query 669 AAAA-TACATA-TTCCA 683
|||| |||||| |||||
Sbjct 799 AAAAATACATAATTCCA 815
> AT2G22290.1 | Symbols: ATRABH1D, ATRAB-H1D, RAB-H1D, ATRAB6,
RABH1d | RAB GTPase homolog H1D | chr2:9466444-9467688 FORWARD
LENGTH=748
Length=748
Score = 503 bits (272), Expect = 1e-141
Identities = 514/628 (82%), Gaps = 28/628 (4%)
Strand=Plus/Plus
Query 21 ATGGCGGCGGTTTCACCTTTGGC-AAAGTTTAAACTGGTGTTCTTAGGAGATCAATCTGT 79
|||||| |||| ||||| || || ||| | ||||||||||||||||||||||||||||||
Sbjct 125 ATGGCGTCGGTGTCACCATTAGCGAAA-TATAAACTGGTGTTCTTAGGAGATCAATCTGT 183
Query 80 CGGAAAAACCAGCATCATCACTCGTTTCATGTATGACAAATTCGACACCACTTACCAGCC 139
||| |||||||||||||||||||||||||||||||| || |||||||| || |||||| |
Sbjct 184 CGGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGGC 243
Query 140 TACCATCGGAATCGATTTTCTT-TCGAAAACAATGTACCTCGAAGATCGAACAGTTCGTT 198
||| || ||||| || || ||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 244 TACTATTGGAATTGACTT-CTTATCGAAAACAATGTACCTTGAAGATCGAACTGTTCGTC 302
Query 199 TGCAGCTATGGGATACGGCTGGACAAGAAAGATTCAGGAGTCTAATCCCAAGTTACATCA 258
|||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 303 TGCAGCTATGGGATACAGCTGGACAAGAAAGATTCAGGAGTTTAATACCAAGTTACATAA 362
Query 259 GAGATTCTTCTGTTGCCA-TTGTTGTATATGATGTATCCAATAGGCAAACGTTTCTGAAT 317
|||||||||||||||| | ||||||| ||||||||| ||||||| | | ||||| ||
Sbjct 363 GAGATTCTTCTGTTGC-AGTTGTTGTTTATGATGTAGCCAATAGACTCTCATTTCTCAAC 421
Query 318 ACCA-CGAAATGGATTGAGGATGTACACAGA-GAAAGAGGTCAAAGCAATGTTATTATTG 375
|| | | || ||||| || || || | | | ||||||| | || ||||||| ||||
Sbjct 422 AC-ATCCAAGTGGATAGAAGAAGTCCGTA-ATGAAAGAGC-CG--GCGATGTTATCATTG 476
Query 376 TTCTTGTTGGAAACAAAACTGATCTTGTTGAAAAAAGGCAAGTATCAATC-AGTGAAGGG 434
||||||| || ||||| ||||||||||| |||||| ||||||| || || || |||||
Sbjct 477 TTCTTGTCGGTAACAAGACTGATCTTGTCGAAAAACGGCAAGTTTCTATTGAG-GAAGGA 535
Query 435 GA-AGACAAGGGTAAAGAGTATGGAGTGATGTTCATTGAGACCAGTGCCAAAGAAA-ATT 492
|| || ||| ||| || || ||||| |||||||||||||| || || |||| | |||
Sbjct 536 GATAG-CAAAGGTCGTGAATACGGAGTTATGTTCATTGAGACGAGCGCGAAAGCAGGATT 594
Query 493 TCAACATTAAGGCTTTGTTCCGGAAGATTGCTGCAGCTTTACCGGGTGTGGACA-CATAT 551
||| |||||| ||||||| || || || ||||| || |||||||| |||| | | |||
Sbjct 595 -CAATATTAAGCCTTTGTTTCGCAAAATCGCTGCGGCATTACCGGGAATGGA-ATCGTAT 652
Query 552 TCATTGGC-AACGAAATCCGAGGACATGGTTGATGTGAATCTAAAGACCA-CTTCAAATT 609
||| | || |||| ||||| ||||||||||| || || || |||| |||| ||||
Sbjct 653 TCAAACACTAA--AAAT--GAGGATATGGTTGATGTAAACCTGAA-ACCAACTTCGAATT 707
Query 610 CATCACAAGGTGAGCAACAAGGAGGAGC 637
|||| |||||||| ||||||||||||||
Sbjct 708 CATCCCAAGGTGATCAACAAGGAGGAGC 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33204771167
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5