BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943992
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39900.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1205 0.0
> AT4G39900.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18508370-18510553
REVERSE LENGTH=1201
Length=1201
Score = 1205 bits (652), Expect = 0.0
Identities = 730/768 (95%), Gaps = 3/768 (0%)
Strand=Plus/Plus
Query 15 tctGTCTGCAATGAGTGATTTCTTCGATGAGGGGAAGCAGCAATTCGCAAGTGTTGCAGA 74
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 255 TCTCTCTGCAATGAGTGATTTCTTCGATGAGGGGAAGCAGCAATTCGCAAGTGTTGCTGA 314
Query 75 TGGGAATGCACCAGTCAAGTATCCAGGCTTCAAGCCACCTAAGTTGAGTTTCGGAGATGG 134
||||||||||||| | ||||||||| ||||||||| |||||||| || ||||||||||
Sbjct 315 TGGGAATGCACCACTTAAGTATCCAAGCTTCAAGCTACCTAAGTCGACTTTCGGAGATAC 374
Query 135 TGGCAAACATAGTGCCGTTGATGTTTTTCCACTTCTTGTCAAGGAGGCTGCATATCCTTT 194
|||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 375 TGGCAAACATAGCGCCATTGATGTTTTCCCACTTCTTGTCAAGGAGGCTGCATTTCCTTT 434
Query 195 GATAGAAGACCGTGGCATCGATACTCCACTGGTCCAAGACGTGTGTACTATCTCAGTCTT 254
| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 435 AAAAGAAGACCGTGACATCGATACTTCACTGGTCCAAGACGTGTGTACTATCTCAGTCTT 494
Query 255 ACCTGATGAAGGAAATACAATCCCACAATGTACCTCGCAGTTTACTCTCTTGAGCTTCGT 314
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 495 ACCTGATGAAGGAAATACAATCCCACAATGTACCTCGCACTTTACTCTCCTGAGCTTCGT 554
Query 315 CAAGGCTCTGCTTCCATCTAAAAATCAGATGTTGATAGATGCCCAACTGAATTGTCAGAA 374
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 555 CAAGGCTCTGCTTCCATCTAAAAATCAGATGTTGATCGATGCGCAACTGAATTGTCAGAA 614
Query 375 AACGCAGAACCGCATCAATGTGCTACTGGGAGGCACAGATTCCTACCAATCATGCGTTGT 434
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 615 AACGCAGAACCGCATCAATGTGCTACTGGGAGGCACTGATTCCTATCAATCATGCGTTGT 674
Query 435 GGACATAAACGTCGAGAAAGGGAATGGTGGTGAGACTGTGACATCTCATGACGAAGTTGT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GGACATAAACGTCGAGAAAGGGAATGGTGGTGAGACTGTGACATCTCATGACGAAGTTGT 734
Query 495 TGCAAGTGTGAAATCTGAGAGTGTACATATGCAAAAGGTATTACAGAGACAAGCAAGCTT 554
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 735 TGCAAGTATGAAATCCGAGAGTGTACATATGCAAAAGGTATTACAGAGACAAGCAAGTTT 794
Query 555 GAGTACTGACAAAGCTATCTCCGAGCGATGCCACGATGCACCAACGAACAGGTGGAGAAG 614
||| ||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 795 GAGCACTGATAAAGCTCTCTCCGAACGATGCCACGATGCACCAACAAACAGGTGGAGAAG 854
Query 615 ATACAAGCGTGCCGCTTCATTTGATTCAAGAAAAATCGTCATCCTATTCTCCATCTTATC 674
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 855 ATACAAGCGTGCCGCTTCATTTGATTCAAGGAAAATCGTCATCCTATTCTCCATCTTATC 914
Query 675 AAGTGTGGGAACATTGATATTGATCTACCTGACACTGAGAGTGAAGCAAAACGGAGACAA 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AAGTGTGGGAACATTGATATTGATCTACCTGACACTGAGAGTGAAGCAAAACGGAGACAA 974
Query 735 CAATAACA---GCTTCAATCACATGTAAACTGTAACATCTCTTTTGGC 779
||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 975 CAACAACAACAGCTTCAATCACATGTAAACTGTAGCATCTCTTTTGGC 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37876546838
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5