BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943995
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39920.1 | Symbols: POR, TFC C | C-CAP/cofactor C-like domai... 1661 0.0
> AT4G39920.1 | Symbols: POR, TFC C | C-CAP/cofactor C-like domain-containing
protein | chr4:18515749-18517274 FORWARD LENGTH=1526
Length=1526
Score = 1661 bits (899), Expect = 0.0
Identities = 1003/1053 (95%), Gaps = 7/1053 (1%)
Strand=Plus/Plus
Query 1 TCACACAATTGGGT--AAACGATATGGAAGACAACGATCAGAGCTTCGCT-GCCGAAACC 57
|||||||| ||||| |||||||||||||||| | | |||||||| || | |||||||||
Sbjct 111 TCACACAACTGGGTAAAAACGATATGGAAGACGATGGTCAGAGCTCCG-TCGCCGAAACC 169
Query 58 CTAGATCCGGCATTGCAGAAGAAGCACCATGACATGCTCGAGCGTCTCTCTGCTCGTCAC 117
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 170 CTAGATCCGGCATTGCAGAAGAAGCACCATGATATGCTCGAGCGTCTCTCCGCTCGTCAC 229
Query 118 CAAGCTCGAAAATCAGATTCACCTGACGCTTCCTCTTCGTCGTCCTCCTCCACTCTTGAA 177
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 230 CAAGCTCGAAAATCAGATTCACCTGACTCTTCCTCTTCGTCG---TCCTCCACTCTTGAA 286
Query 178 TCGACATCCTCGTTTCTCGCTAAATTCTCCGATTCAAAGCGATCCATCGAGTCTCGGATC 237
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TCGACTTCCTCGTTTCTCGCTAAATTCTCCGATTCAAAGCGATCCATCGAGTCTCGGATC 346
Query 238 GCTGAGTCACGACTCGTTTCCTCCTCTACGGATTCGTCAAAGCTTAAATCGGATCTTGCT 297
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 347 GCCGAGTCACGACTCGCTTCCTCCTCTACGGATTCGTCAAAGCTTAAGTCGGATCTTGCT 406
Query 298 GAGATCTCCGTAGCTATTAACAATCTGGAGAAGCTTCTCGCTGAGAACTCGTATTTTCTT 357
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 407 GAGATCTCCGTAGCCATTGACAATCTCGAGAAGCTTCTCGCTGAGAACTCGTATTTTCTT 466
Query 358 CCTTCCTACGAGGTTCGATCCTCTCTGAAAATTGTATCCGATCTCAAACAGAGTCTCGAT 417
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 467 CCTTCCTACGAGGTTCGATCCTCTCTGAAAATCGTATCCGATCTCAAACAGAGTCTCGAC 526
Query 418 ATTCTCTCCGGCGAGTTAGTCCCGAAGAAGAAGTTCTCGTTCAAGAGCAAATCAACGACC 477
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 527 ATTCTCTCCGGCGAGTTAGTCCCGAAGAAGAAATTCTCGTTCAAGAGCAAATCAACGACC 586
Query 478 AAAAAGCCGGAATCAAAACTCCCGGAGATACAGAAATCCGACGCCGTTTTACCTCCGAAA 537
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 587 AAAAAGCCGGAATCAAAACTCCCGGAGATACAGAAACCCGACGTCGTTTTACCTCCGAAA 646
Query 538 CTCCTCCCCGTACGCGATTCTCCGGGATTGAGAAACAAACACGGAGTGACTCTGGTGAAA 597
||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 647 CTCGTCCCCGTACGCGATTCTCCGGGATTGAGAAACAAACACGGAGAGACTCTTGTGAAA 706
Query 598 AGTTTCAAAGGCTCGTCGATCGGAGAATTCACATTGTCGGATCTTGATTCATGTCAAGTA 657
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AGCTTCGAAGGCTCGTCGATCGGAGAATTCACATTGTCGGATCTTGATTCATGTCAAGTA 766
Query 658 AAATTAACAGGAACTGTTAACGCTCTGTTCCTTCACCGATTAAAGAAGTGCAATGTGTAC 717
|||||||||||||| || ||||||||||||||||||||| | |||||||| | ||| |||
Sbjct 767 AAATTAACAGGAACGGTCAACGCTCTGTTCCTTCACCGACTGAAGAAGTGTAGTGTCTAC 826
Query 718 ACAGGTCCAGTGATTGGTTCGATTCTGATTGATGACGTAGAAGATTGTGTTCTTGTATTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 827 ACAGGTCCAGTGATTGGTTCGATTCTGATTGATGACGTAGAAGATTGTGTTCTGGTATTG 886
Query 778 GCGTCGCATCAGATCAGAATCCATTGCGCTAGGAAGAGTGATTTCTACCTGAGAGTGAGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GCGTCGCATCAGATCAGAATCCATTGCGCTAGGAAGAGTGATTTCTACCTGAGAGTGAGG 946
Query 838 AGTCGTCCCATAATTGAAGACAGCAATGGTGTCAGATTTGCTCCTTATTGTTTGGATTAC 897
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 947 AGTCGTCCCATAATTGAAGACAGTAACGGTGTCAGATTTGCTCCTTATTGTTTGGATTAC 1006
Query 898 CAAGGGATTGATGACGATTTGAAGACGGCGGGTTTGGAGGAGGAGACTAAGAATTGGGCC 957
||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1007 AAAGGGATTGATGAAGATTTGAAGACGGCTGGTTTGGAGGAGGAGACTAACAACTGGGCC 1066
Query 958 AATGTGGATGATTTCCGGTGGCTGAGAGCTGTACAGTCGCCTAATTGGTCAGTTTTGCCG 1017
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1067 AATGTGGATGATTTCCGGTGGCTGAGAGCTGTACAGTCGCCGAATTGGTCACTTTTGCCG 1126
Query 1018 GAAGAAGAAAGGGTCTCTTTGGTTACCATTTCC 1050
||||||||||||||||||||| |||||||||||
Sbjct 1127 GAAGAAGAAAGGGTCTCTTTGCTTACCATTTCC 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5