BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943996
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39940.1 | Symbols: AKN2, APK2 | APS-kinase 2 | chr4:1851971... 1530 0.0
> AT4G39940.1 | Symbols: AKN2, APK2 | APS-kinase 2 | chr4:18519717-18521568
FORWARD LENGTH=1244
Length=1244
Score = 1530 bits (828), Expect = 0.0
Identities = 893/924 (97%), Gaps = 5/924 (1%)
Strand=Plus/Plus
Query 2 GTTCTTGGCCGTCGGATTCAATGGAAGGATTAGCTATCAGAGCATCGCGACCGTCAGTTT 61
||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 51 GTTATTGGCCGTCGGATTCAATGGAAGGATTAGCTATCAGAGCATCTCGACCGTCGGTTT 110
Query 62 TCTGTTCTACTCCAGGTCTCGGCGGCGATTCTCACCGAAAACCTCCAAGTGACGGTTTCC 121
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 111 TCTGTTCTATTCCAGGTCTCGGCGGCGATTCCCACCGAAAACCTCCAAGTGACGGTTTCC 170
Query 122 TCAAGCTGCCTGCGTCGTCTATTGCGGCGG--A-CCGAAAATTAGTAGCGAATTCTGCTT 178
||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||
Sbjct 171 TCAAGCTGCCTGCGTCGTCTATTCCGGCGGACAGCCGAAAATTAGTAGCGAATTCTACTT 230
Query 179 CTTTTCATCCAATATCCGCCATTAACGTCTCTGCTCAAGCTTCCCTCACCGCTGATTTTC 238
| ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 231 CCTTTCATCCAATCTCAGCCGTTAACGTCTCTGCTCAAGCTTCCCTCACCGCTGATTTTC 290
Query 239 CCGCCCTTTCAGAAACGATTCTGAAAGAGGGAAG-AATAAACGGAAAAGAGAAAGCAGAG 297
|||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||
Sbjct 291 CCGCCCTTTCAGAAACTATACTGAAAGAGGGAAGAAAT-AACGGAAAAGAGAAAGCAGAG 349
Query 298 AACATCGTGTGGCACGAGAGTTCAATCTGTAGATGCGACAGACAACAACTTCTTCAACAA 357
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 350 AACATCGTGTGGCACGAGAGTTCGATATGCAGATGCGACAGACAACAACTTCTTCAACAA 409
Query 358 AAGGGTTGTGTCGTTTGGATCACTGGTCTCAGTGGTTCAGGGAAAAGCACTGTTGCTTGT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 AAGGGTTGTGTCGTTTGGATCACTGGTCTCAGTGGTTCAGGGAAAAGCACTGTTGCTTGT 469
Query 418 GCACTAAGTAAAGCATTGTTTGAAAAAGGCAAACTTACTTACACACTCGACGGCGACAAT 477
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 470 GCACTAAGTAAAGCATTGTTTGAAAGAGGCAAACTTACTTACACACTCGACGGCGACAAT 529
Query 478 GTCCGTCACGGCCTTAACCGTGACCTCACTTTCAAAGCAGAGGACCGCACCGAAAACATT 537
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 530 GTCCGTCACGGCCTTAACCGTGACCTCACTTTCAAAGCAGAGCACCGCACCGAAAACATT 589
Query 538 AGAAGAATTGGTGAGGTGGCTAAGTTGTTTGCTGACGTTGGAGTCATTTGTATAGCAAGT 597
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 590 AGAAGAATTGGTGAGGTGGCTAAGTTGTTTGCTGACGTCGGAGTCATTTGTATAGCAAGT 649
Query 598 TTGATTTCTCCGTACCGGAGAGACAGAGACGCGTGCCGGTCCTTGTTACCTGATGGCGAT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 650 TTGATTTCTCCGTACCGGAGAGACAGAGACGCGTGCCGGTCCTTGTTACCTGACGGCGAT 709
Query 658 TTCGTCGAGGTCTTCATGGACGTTCCTCTTCATGTGTGCGAGTCAAGAGATCCAAAGGGG 717
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 710 TTCGTCGAGGTCTTCATGGACGTTCCTCTTCATGTGTGCGAGTCGAGAGATCCAAAGGGG 769
Query 718 CTGTACAAGCTTGCACGTGCCGGCAAAATCAAAGGCTTCACTGGAATCGACGACCCTTAC 777
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 770 TTGTACAAGCTTGCACGTGCAGGCAAAATCAAAGGCTTCACTGGAATCGACGACCCTTAC 829
Query 778 GAGGCACCAGTGAATTGCGAGGTAGTGCTGAAACACACAGGAGACGACGATTCGTGTTCG 837
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 830 GAGGCACCAGTGAATTGCGAGGTAGTGCTGAAACACACAGGAGACGACGAGTCGTGTTCG 889
Query 838 CCACGTCAGATGGCTGAGAACATTATCTCTTACCTGCAAAACAAAGGTTACCTTGAGGGC 897
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 890 CCACGTCAGATGGCTGAGAACATCATCTCTTACCTGCAAAACAAAGGTTATCTTGAGGGC 949
Query 898 TAAGTCAAAGTCGGAAAAATCAAC 921
||||||||||||||||||||||||
Sbjct 950 TAAGTCAAAGTCGGAAAAATCAAC 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5