BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944000
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39955.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1633 0.0
> AT4G39955.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:18530543-18532259 FORWARD LENGTH=1188
Length=1188
Score = 1633 bits (884), Expect = 0.0
Identities = 979/1024 (96%), Gaps = 9/1024 (1%)
Strand=Plus/Plus
Query 1 ATCAGAAGAGGAAGAG-ATCAATGGCGAGTTGCTTCAGCTACGTGTCTTCTCGTAACAAA 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 ATCAGAAGAGGAAGAGAATCAATGGCGAGTTGCTTCAGCTACGTGTCTTCTCGTAACAAA 69
Query 60 TGTTACCAATACAGCTTCTCTCGTGCTGGTCTCCGATCATCTACCTCCGATCTTGGCGAC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TGTTACCAATACAGCTTCTCTCGTGCTGGTCTCCGATCATCTACCTCCGATCTTGGCGAC 129
Query 120 GGCACCGTCGTCCACTGTTGGATCCCACAGAGTCACATCGACACCAAGCCCACGCTCCTC 179
||||||||| |||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 130 GGCACCGTCTTCCACTGTTGGATCCCACTTACTCACATCCACACCAAGCCCACGCTCCTC 189
Query 180 CTCCTTCACGGGATCGGAGCTAACGCTATGTGGCAGTGGGACCGGTTCATCGACCGGTTT 239
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 190 CTCCTTCACGGGATCGGAGCTAACGCTATGTGGCAGTGGGACCGCTTCATCGACCGTTTT 249
Query 240 ATTCCCCGGTTCAACGTCTACGTACCGGACCTCATCTTCTTTGGCGACTCGTACACCACT 299
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 250 ATCCCCCGCTTCAACGTCTACGTACCGGACCTCATCTTCTTTGGCGACTCCTACACCACT 309
Query 300 CGTCCCGACCGGTCAGAGTCTTTCCAGGCGAGTTGTGTCATGAAGGCGATGGATGGTTAC 359
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 310 CGTCCCGACCGCTCAGAGTCTTTCCAGGCGACTTGTGTCATGAAGGCGATGGATGCTTAC 369
Query 360 GGTGTTAGGACCATGACCGTGGCTGGTCTCAGCTACGGCGGGTTCGTGGCCTACTCGTTG 419
|||||||||||||||||||| ||||| ||||||||||| || || ||||||||||| |||
Sbjct 370 GGTGTTAGGACCATGACCGTCGCTGGCCTCAGCTACGGTGGTTTTGTGGCCTACTCCTTG 429
Query 420 GCGGCGCAGTTTAAGGAGAGGGTAGATCGAGTTGTGCTAATATGCGCCGGTGTTGCTCTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GCGGCGCAGTTTAAGGAGAGGGTAGATCGAGTTGTGCTAATATGCGCCGGTGTTGCTCTG 489
Query 480 GAGGAGAAAGACTCGGAGGATGGGATGTTTAAAGTGAAGAGCCCGGAGGAAGCGGCGGCT 539
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 490 GAGGAGAAAGACTCGGAGGATGGTATGTTCAAAGTGAAGAGCCCGGAGGAAGCGGCGGCT 549
Query 540 GTTTTGTTTCCTCAGTCTCCTTCGATGCTCCGGCGGCTTCTCCAGTTATCTTTCTACAAA 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 550 GTTTTGTTTCCTCAGTCTCCTTCGATGCTCCGGCGGCTTCTCCAGTTATCTTTCTATAAA 609
Query 600 CCGCCGATTTGGATCCCTTCTTGCTTTGCCATGGACTACATTCATGTGATGTGTAAAGAT 659
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 610 CCGCCGATTTGGATCCCTTCTTGCTTTGCCATGGACTACATTCATGTAATGTGTAAAGAC 669
Query 660 TATCTTCAAGAAAGGAAAGAACTTGTGGAAGCTCTGCATAAGGGTAGAAGATTCTCAAAT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 670 TATCTTCAAGAAAGGAAAGAACTTGTGGAAGCTCTGCATAAGGGTAGAAGATTCGCCAAT 729
Query 720 CTTCCAAAGATAACACAGCCGGCATTGATGATATGGGGAGAGGAAGATCAAGTTTTTCCG 779
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 730 CTTCCAAAGATAACACAGCCGACATTGATGATATGGGGAGAGGAAGATCAAGTATTTCCA 789
Query 780 GTGGAACTAGCTCATAGATTGAAAAGATATTTAGGGGAAAACAGAGCACAATTGGTGTTA 839
|| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 790 GTTGAATTAGCTCATAGATTGAAAAGATATTTAGGGGAAGACAGAGCACAATTGGTGTTA 849
Query 840 CTAAAGAAGACAGGACATGCGGTTAATGAAGAGAAACCAAAAGAGATGTACAAACACATG 899
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 850 CTGAAGAAGACAGGACATGCGATTAATGAAGAGAAACCAAAAGAGATGTACAAACACATG 909
Query 900 AAATCTTTTCTTTGCACTGACGCAATGATTCCTCCA-AATCA---GATCAATGCTAAGAG 955
|||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 910 AAATCTTTTCTTTGCACTGACGCAATGATTCCTC-AGAATCACCAGATCAATGCTAAGAG 968
Query 956 ACTCATGTTAGCAAACTTGATATCCC-A--TCAGCAGATCAATAAGTGATGTTACTGCGG 1012
|||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |
Sbjct 969 ACTCATGTTAGCAAACTTGATATCCCCAGATCAGCAGATCAACAAGTGATGTTACTGCAG 1028
Query 1013 AAAA 1016
||||
Sbjct 1029 AAAA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5