BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944002
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39970.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1613 0.0
> AT4G39970.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr4:18536538-18538506 REVERSE
LENGTH=1168
Length=1168
Score = 1613 bits (873), Expect = 0.0
Identities = 953/991 (96%), Gaps = 8/991 (1%)
Strand=Plus/Plus
Query 3 AGAGACAGAGATTCATC-A-ATGGCGGTTTCTTGCAGCCACTCTGCGATTCTCTTCTCT- 59
||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||
Sbjct 58 AGAGACAGAGATTCATCGATATGGCGGTTTCTTGCAACCACTCTGCGATTCTCTTCTCTC 117
Query 60 C--CATCCACCGCTGGTTCCTCCTCCGTTTCTTCTTCCTCGTCGCTCATCGGCTTTCCTC 117
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 118 CATCATCCACCGCTGGTTCCTCCTCCGTTACTTCTTCCTCGTCGCTCATCGGCTTTCCTC 177
Query 118 GTTTCCAAACGCTGCGTTTCAAATCAAGAAGCTTTTATTCTAAATCTAGAG--T-TTCTC 174
|||||||||||||||||||||||||||||||| ||||||| |||||||||| | |||||
Sbjct 178 GTTTCCAAACGCTGCGTTTCAAATCAAGAAGCGTTTATTCGAAATCTAGAGTTTCTTCTC 237
Query 175 CTGTCTCGGCATTGCCTTCACGGTCTCTGGAAGCTCTGATTTTCGATTGCGATGGTGTGA 234
|||||||||||||||||| ||| ||||| ||||||||||||||||||||||| || ||||
Sbjct 238 CTGTCTCGGCATTGCCTTTACGTTCTCTAGAAGCTCTGATTTTCGATTGCGACGGCGTGA 297
Query 235 TTCTCGAATCGGAGAATCTACACCGTCAAGCTTACAACGACGCTTTCTCGCATTTCGATG 294
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 298 TTCTCGAATCCGAGAATCTACACCGTCAAGCTTACAACGATGCTTTCTCGCATTTCGATG 357
Query 295 TTCGATGTCCTCCTTCTTCCTCTGAGTCTCTCGATTGGAGCCTCGAGTTCTACGATAAGT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTCGATGTCCTCCTTCTTCCTCTGAGTCTCTCGATTGGAGCCTCGAGTTCTACGATAAGT 417
Query 355 TTCAGAATCTAGTCGGAGGTGGAAAACCGAAAATGCGTTGGTATTTCAAAGAAAATGGAT 414
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 418 TTCAGAATCTAGTCGGAGGTGGGAAACCGAAAATGCGTTGGTATTTCAAAGAAAATGGAT 477
Query 415 GGCCAACTTCCACCATTTTCGAGTCACCTCCTGAGAATGACGCTGATCGAGCCAAGTTAA 474
||||||||||||||||||| || || |||||| ||||||||| |||||||||||||||||
Sbjct 478 GGCCAACTTCCACCATTTTTGACTCTCCTCCTCAGAATGACGATGATCGAGCCAAGTTAA 537
Query 475 TCGATACTCTTCAGGATTGGAAAACTGAGAGATATAAAGAAATCATAAAATCAGGAAGGG 534
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 538 TCGATACTCTTCAGGATTGGAAAACTGAGAGGTATAAAGAAATCATAAAATCAGGAAGTG 597
Query 535 TAGAACCAAGACCTGGTGTAATAAGACTAATGGATGAAGCAAAAGCTGCTGGGAAAAAAC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TAGAACCAAGACCTGGTGTAATAAGACTAATGGATGAAGCAAAAGCTGCTGGGAAAAAAC 657
Query 595 TAGCTGTTTGTTCTGCAGCTACAAAGAGTTCAGTAATCTTATGTCTCGAGAATCTAATCG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TAGCTGTTTGTTCTGCAGCTACAAAGAGTTCAGTAATCTTATGTCTCGAGAATCTAATCG 717
Query 655 ATATTGAGCGGTTCCAAGGACTTGATTGCTTCCTTGCAGGAGATGATGTTAAGGAGAAAA 714
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 ATATCGAGCGGTTCCAAGGACTTGATTGCTTCCTTGCAGGGGATGATGTTAAGGAGAAAA 777
Query 715 AACCCGATCCTTCGATATATATTACAGCTGCCGAGAAGCTAGGTGTTTCAGTGAAAGACT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AACCCGATCCTTCGATATATATTACAGCTGCCGAGAAGCTAGGTGTTTCAGTGAAAGACT 837
Query 775 GTTTGGTCATAGAGGACAGTGTGATTGGCCTGCAGGCTGCTACAAAAGCAGGGATGTCAT 834
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTTTGGTCGTAGAGGACAGTGTGATTGGCCTGCAGGCTGCTACAAAAGCAGGGATGTCAT 897
Query 835 GTGTGATTACATACACTTCTTCAACCTCTGATCAGGATTTCAATGATGCGATTGCCGTAT 894
||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 GTGTGATCACGTACACTTCTTCAACCTCTGATCAGAATTTCAATGATGCGATTGCCGTAT 957
Query 895 ACCCTGATCTCAGTAATGTGAAATTGAAAGACCTGGAAACTCTGCTTCAAACAATTGTCA 954
||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct 958 ACCCTGATCTCAGCAATGTGAAATTGAAGGACTTGGAAACTCTGCTTCAAACAATAGTCA 1017
Query 955 CTGCAGCTTAAGATATTTGTCTCCTATTCAT 985
||||||||||||| |||||||||||||||||
Sbjct 1018 CTGCAGCTTAAGACATTTGTCTCCTATTCAT 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5