BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944003
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39980.1 | Symbols: DHS1 | 3-deoxy-D-arabino-heptulosonate 7... 2529 0.0
> AT4G39980.1 | Symbols: DHS1 | 3-deoxy-D-arabino-heptulosonate
7-phosphate synthase 1 | chr4:18539575-18542093 FORWARD LENGTH=1918
Length=1918
Score = 2529 bits (1369), Expect = 0.0
Identities = 1535/1615 (95%), Gaps = 11/1615 (1%)
Strand=Plus/Plus
Query 8 AGAGAAAATCTCTCATGGCTCTTTCAAACGCCTCCTCTCTCTCCGCCAGATCTATCTACG 67
||||||||||| | ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 66 AGAGAAAATCTGTGATGGCTCTTTCCAACGCCTCCTCTCTCTCCACCAGATCTATCTA-- 123
Query 68 GCGGCGGCGACGCTCGTATTTCTCACCGT-CAGAGCAACCGTCAATCATCCTTCACATTT 126
|||||| || || ||||||||||| || |||||||||||||||||||||||||||
Sbjct 124 -CGGCGGTGA---TC---TTTCTCACCGTCCA-AGCAACCGTCAATCATCCTTCACATTT 175
Query 127 CATCCCGCCGTCAACACCAAGCTTAAGTCCGTTAACCTCGTTACGGCGGTACACGCGGCT 186
|||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||
Sbjct 176 CATCCCGCCGTCAACACCAAGCCTAAATCCGTTAACCTCGTCACGGCTGTACACGCGGCT 235
Query 187 GAGCCAGCTAGAAACGCTGTTTCTGTTAAGGAATCCGTTGCGCCGTCGTCGTCTGGTGCA 246
||||||||||||||||||||||| || || |||||||||||| | || ||||||||||||
Sbjct 236 GAGCCAGCTAGAAACGCTGTTTCAGTCAAAGAATCCGTTGCGTCTTCTTCGTCTGGTGCA 295
Query 247 TTGAAATGGACTCCAGAGAGCTGGAAATTGAAGAAAGCTCTGCAACTTCCTGATTACCCT 306
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||
Sbjct 296 TTGAAATGGACTCCAGAGAGCTGGAAACTGAAGAAGGCTCTGCAACTTCCTGATTATCCT 355
Query 307 AACGCTAATGAGCTTGAGTCTGTGCTTAAGACGATTGAGGCTTTCCCTCCGATTGTCTTC 366
||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||
Sbjct 356 AACGCCAATGAGCTTGAGTCTGTGCTTAAAACGATAGAGGCTTTTCCTCCGATTGTGTTC 415
Query 367 GCCGGAGAAGCTAGAAATCTTGAAGAGAGATTGGCTGATGCTGCTGTTGGTAAAGCTTTT 426
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GCCGGAGAAGCTAGGAATCTTGAAGAGAGATTGGCTGATGCTGCTGTTGGTAAAGCTTTT 475
Query 427 CTTCTCCAAGGAGGTGATTGTGCTGAGAGTTTCAAGGAGTTCAATGCTACTAATATCAGA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTTCTCCAAGGAGGTGATTGTGCTGAGAGTTTCAAGGAGTTCAATGCTACTAATATCAGA 535
Query 487 GATACCTTTAGGGTTTTGCTTCAGATGAGTATTGTTCTTACATTCGGCGGCCAAGTTCCG 546
|| ||||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 536 GACACCTTCAGGGTTCTGCTTCAGATGAGTATTGTTCTTACATTCGGTGGCCAGGTTCCG 595
Query 547 GTCATTAAGGTTGGGAGGATGGCTGGTCAATTTGCCAAGCCTAGATCTGATCCATTTGAG 606
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 596 GTCATTAAGGTTGGGAGGATGGCTGGTCAATTTGCAAAGCCTAGATCTGATGCATTTGAG 655
Query 607 GAGAAGGATGGAGTGAAATTACCTAGCTACAAGGGAGATAACATCAATGGTGACACTTTT 666
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 656 GAGAAGGATGGAGTGAAATTACCAAGCTACAAGGGAGATAACATCAATGGTGATACTTTT 715
Query 667 GATGAGAAATCTAGAATTCCTGATCCTAATAGGATGATTCGTGCTTACACACAATCTGCT 726
||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 716 GATGAGAAATCCAGGATTCCTGATCCTAATAGGATGATTCGAGCTTACACTCAATCTGCA 775
Query 727 GCTACTTTGAATCTTCTTAGAGCCTTTGCCACTGGAGGTTATGCTGCTATTCAAAGAGTT 786
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 776 GCTACTTTGAATCTTCTTAGAGCCTTTGCCACTGGAGGTTACGCTGCTATTCAAAGAGTT 835
Query 787 ACTCAATGGAACCTTGATTTTGTTGAACAAAGTGAGCAAGCTGACAGGTACCAGGAATTA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ACTCAATGGAACCTTGATTTTGTTGAACAAAGTGAGCAAGCTGACAGGTACCAGGAATTA 895
Query 847 GCTAACAGGGTTGATGAGGCCTTGGGGTTTATGTCTGCATGTGGACTTGGCACGGATCAT 906
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 896 GCTAATAGGGTTGATGAGGCCTTGGGGTTCATGTCTGCATGTGGACTTGGCACGGATCAT 955
Query 907 CCACTCATGACTACAACTGATTTCTACACATCACATGAGTGTTTGCTTCTGCCTTATGAA 966
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 956 CCACTTATGACTACAACTGATTTCTACACATCCCATGAGTGTTTGCTTCTGCCTTATGAA 1015
Query 967 CAGTCGCTTACAAGGTTGGATTCAACTTCTGGTCTGTACTATGATTGTTCTGCACACATG 1026
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1016 CAGTCCCTTACAAGGTTGGATTCAACTTCTGGTCTCTACTATGATTGTTCTGCACACATG 1075
Query 1027 GTGTGGTGCGGAGAGCGTACCAGACAATTGGATGGTGCTCATGTCGAGTTTCTCAGGGGG 1086
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1076 GTCTGGTGCGGAGAGCGTACCAGACAATTGGATGGCGCTCATGTCGAGTTTCTCAGGGGG 1135
Query 1087 ATTGCTAATCCTCTGGGCATTAAGGTGAGCAATAAAATGGATCCCAATGAGCTGGTCAAG 1146
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 1136 ATTGCTAATCCTCTGGGCATTAAGGTGAGCAACAAAATGGATCCCTTTGAGCTGGTTAAG 1195
Query 1147 CTAGTAGAAATCCTGAATCCTAACAACAAGCCTGGAAGAATCACTGTAATTGTGAGAATG 1206
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1196 CTAGTAGAAATCCTGAATCCTAATAACAAGCCTGGAAGAATCACTGTAATTGTGAGAATG 1255
Query 1207 GGTGCCGAGAACATGAGAGTTAAGCTTCCCCACCTGATCAGAGCAGTCCGCAGATCAGGC 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GGTGCCGAGAACATGAGAGTTAAGCTTCCCCACCTGATCAGAGCAGTCCGCAGATCAGGC 1315
Query 1267 CAGATTGTGACATGGGTCTGTGATCCAATGCATGGAAACACTATCAAAGCACCTTGCGGT 1326
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1316 CAGATTGTGACATGGGTCTGCGATCCAATGCATGGAAACACCATCAAAGCACCTTGCGGT 1375
Query 1327 CTGAAAACACGTGCCTTTGACTCAATCCTGGCTGAAGTCCGAGCATTCCTTGATGTGCAC 1386
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1376 CTTAAAACACGTGCCTTTGACTCAATACTGGCTGAAGTCCGAGCATTCCTTGATGTGCAC 1435
Query 1387 GAACAAGAAGGAAGCCATGCTGGTGGTATCCATCTTGAGATGACAGGACAGAACGTGACA 1446
|| |||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||
Sbjct 1436 GAGCAAGAAGGAAGCCACGCGGGCGGTATCCATCTCGAGATGACAGGTCAGAACGTGACA 1495
Query 1447 GAATGCATTGGAGGGTCCCGCACTGTGACCTACGATGACCTCAGTTCTCGCTACCACACA 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GAATGCATTGGAGGGTCCCGCACTGTGACCTACGATGACCTCAGTTCTCGCTACCACACA 1555
Query 1507 CACTGTGACCCAAGGCTGAACGCGTCACAGTCTCTTGAACTGGCTTTCATTGTTGCAGAA 1566
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1556 CACTGTGACCCAAGGCTGAACGCGTCACAGTCTCTTGAACTTGCCTTCATTGTTGCAGAA 1615
Query 1567 CGGCTCAGGAAGAGAAGAACTGGTAGCCAGCGAGTGTCTTGAGTGTGGTTTTTCC 1621
|||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||
Sbjct 1616 CGGCTCAGGAAGAGAAGAACGGGTAGCCAGCGTGTGTCTTGAGTCCGGTTCTTCC 1670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5