BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944007
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT4G40020.1 | Symbols: | Myosin heavy chain-related protein | ... 2872 0.0
AT4G35295.1 | Symbols: | homoserine kinase, putative / HSK, pu... 62.1 2e-08
> AT4G40020.1 | Symbols: | Myosin heavy chain-related protein
| chr4:18553453-18555300 REVERSE LENGTH=1848
Length=1848
Score = 2872 bits (1555), Expect = 0.0
Identities = 1764/1863 (95%), Gaps = 21/1863 (1%)
Strand=Plus/Plus
Query 22 ATGGGAGAAGTAGATGAGAAACCGTCCATTGATGTAGCTTCTCCGAGGTATTCTTCTAAC 81
||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 1 ATGGGAGAAGTCGATGAGAAACCGTCCATTGATGTAGCTTCTCCAAGGTATTCATCGAAC 60
Query 82 AAAGTTGCGGATATTGATACAGAGCTTTACAAGATGAAAGCTTCCCTTGAGAACAGAGAA 141
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AAAGTTGCGGATATTGGTACAGAGCTTTACAAAATGAAAGCTTCCCTTGAGAACAGAGAA 120
Query 142 AACGAAGTCGTTTCTTTAAAAGC-CGAGTTATTGAAGAAAGACATCTTCATCAAGAATCT 200
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 121 AACGAAGTCGTTTCTTTAAAA-CAAGAGTTATTGAAGAAAGACATCTTCATCAAGAATCT 179
Query 201 TGAAGCTTCAGAGAAGAAACTGCTTGATTCATTTAAAGATCAATCGAGAGAGTTAGAGGA 260
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 TGAAGCTGCAGAGAAGAAACTGCTTGATTCGTTTAAAGATCAATCGAGAGAGTTAGAGGA 239
Query 261 AACCAAGGCTTTGGTAGAAGAATCGAAGGTAGAGATCGCTTCATTAAAAGAGAAGATAGA 320
|||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 240 AACCAAAGCTTTGGTAGAAGAGTCAAAGGTAGAGATTGCTTCATTAAAAGAGAAGATAGA 299
Query 321 GACATCTTACAATAGCCAAGATTCGAGCGAGGAAGACGAAGAAGAAGACGATAGTTCTGT 380
||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 300 TACATCTTACAATAGCCAAGATTCCAGCGAGGAAGAC------GAAGACGATAGTTCTGT 353
Query 381 TCAGGATTTTGATATTGAGTCTATGAAGATTGAGATGGAATCAACAAAGGAGTCTCTCGC 440
|||||||||||||||||||||| |||||| |||||||||||| || |||||| ||| ||
Sbjct 354 TCAGGATTTTGATATTGAGTCTTTGAAGACTGAGATGGAATCGACCAAGGAGAGTCTTGC 413
Query 441 ACATGCTCATGAGGCTGCACAAGCTTCTTCTTTAAAGGTTTCTGAATTGTTAGAAGAGAT 500
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 414 ACAGGCTCATGAGGCTGCACAAGCCTCTTCTTTAAAGGTTTCTGAATTGTTAGAAGAGAT 473
Query 501 GAAATCGGTTAAGAGCGAGCTTAAATCAGCGACTGATGCAGAAATGACGAGCGAGAAAGC 560
|||||||||||||| ||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 474 GAAATCGGTTAAGAACGAGCTTAAATCAGCGACTGATGCAGAGATGACTAACGAGAAAGC 533
Query 561 TATGGATGATTTGGCATTGGCTTTGAAAGAGGTAGCTACTGATTCTAGCCAAACGAAAGA 620
|||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct 534 AATGGATGATTTGGCTTTAGCTTTGAAAGAGGTAGCTACTGATTGTAGCCAAACGAAAGA 593
Query 621 GAAGCTTGTGATTGCAGAAACAGAGCTCGAGGCTGCTAGGTTAGAGTCTCAGCAATGGAA 680
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 594 GAAGCTTGTGATTGTGGAAACAGAGCTCGAGGCTGCTAGGATAGAGTCTCAGCAATGGAA 653
Query 681 GGAGAAGTACGACGAAGTGAGGAAAGAAGCTGAATTGCTTAAGAACACGAGTGAGAGACT 740
||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 654 GGACAAGTACGAGGAAGTGAGGAAAGATGCTGAATTACTTAAGAACACGAGTGAGAGACT 713
Query 741 AAGGATTGAAGCAGAGGAATCACTTTTGGCTTGGAATGGGAAAGAATCTGTGTTTGTGAG 800
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 714 AAGGATTGAAGCAGAGGAATCGCTTTTGGCTTGGAATGGGAAAGAATCTGTGTTTGTGAC 773
Query 801 TTGTATAAAGAGAGGAGAAGATGAGAAGAATTCACTTCTTGATGAGAACAATAGGTTGCT 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTGTATAAAGAGAGGAGAAGATGAGAAGAATTCACTTCTTGATGAGAACAATAGGTTGCT 833
Query 861 TGAAGCTCTTGTCGCTGCTGAGAATTTGAGCAAGAAGGCTAAAGAAGAGAACCATAAGGT 920
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 834 TGAGGCTCTTGTTGCTGCTGAGAATTTGAGCAAGAAGGCTAAAGAAGAGAATCATAAGGT 893
Query 921 TAGAGATATACTTAAACAAGCGATTAACGAAGCTAATGTTGCGAAAGAAGCAGC-GGGTA 979
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 894 TAGGGATATACTAAAACAAGCGATTAACGAAGCTAATGTTGCGAAAGAAGCAGCTGGG-A 952
Query 980 TAGCGAGAGCTGAGAATTCGAATTTGAAAGATGCCTTGTTGGATAAGGAAGAGGAACTGC 1039
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 953 TTGCGAGAGCTGAGAATTCGAATTTGAAGGATGCCTTGTTGGATAAGGAAGAGGAACTGC 1012
Query 1040 AATTTGCTTTGAAGGAGATTGAGAGAGTGAAGGTTAATGAAGCTGTGGCTAATGACAATG 1099
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AGTTTGCTTTGAAGGAGATTGAGAGAGTGAAGGTTAATGAAGCTGTGGCTAATGACAATA 1072
Query 1100 TTAAGAAGTTGAAGAAGTTGTTGTCTGAAATAGAGGTAGCTATGGAGGAAGAGAAACAGA 1159
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TTAAGAAGTTGAAGAAGATGCTGTCTGAAATAGAGGTAGCTATGGAGGAAGAGAAACAGA 1132
Query 1160 GAAGCTTAAACAGACAAGAGTCGATGCCgaaag-a--t-gtagaagttgttgagaagaag 1215
|||||||||||||||||||||||||||| |||| | | |||||||||||||||||||||
Sbjct 1133 GAAGCTTAAACAGACAAGAGTCGATGCC-AAAGGAAGTTGTAGAAGTTGTTGAGAAGAAG 1191
Query 1216 attgaagagaaggagaagaaggaagagaagaaagagaacaagaaggagaagaaagagagc 1275
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 ATTGAGGAGAAGGAGAAGAAGGAAGAGAAGAAAGAGAACAAGAAGGAGAAGAAAGAGAGC 1251
Query 1276 aaaaaggagaagaaagaacatagcgagaagaaggaagagaaggagaagaaagagcagaca 1335
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1252 AAGAAGGAGAAGAAAGAACATAGCGAGAAGAAAGAAGACAAGGAGAAGAAAGAGCAGACA 1311
Query 1336 catcagaacatcgataagaagaTGATTGGGAAAACTTGTAGTTTCAGTATCATGAAGCTT 1395
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CATCAGAACTTCGATAAGAGGATGATTGGGAAAACTTGTAGTTTCAGTATCATGAAGCTA 1371
Query 1396 GCTCATCACAATCACAACCACAAGCACAACAAAGAAACATTAGAGGAAGAGACAAAAAAC 1455
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1372 GCTCATCACAATCACAACCACAAGCACAACAAAGAAACATCAGAGGAAGAGACAAAAAAC 1431
Query 1456 GCAAACGGTGGGAATCATCATCATCAAGAGCACAGTGATGAAAGTGGTGAAGGAAACTCT 1515
|||||||||||||||||||| | | || | ||||| |||||||||||||||||||||
Sbjct 1432 GCAAACGGTGGGAATCATCA--AG-A-GA--ATAGTGACGAAAGTGGTGAAGGAAACTCT 1485
Query 1516 CCAAGTTCAGATTCATATCTATTCAAAGGCTCGATCTTTGATGTAGCAGAGACGCCACAT 1575
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1486 CCAAGTTCAGATTCATATCTATTCAAAGGTTCGATCTTTGATATAGCAGAGACGCCACAT 1545
Query 1576 GCGCAAATGCATCACAAAAGGAGGTCATCGTGTACGTTTTTGGAAGAAGTAGGGACAATA 1635
|| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 1546 GCACAAATGCATCACAAAAGGAGGTCTTCGTGTACGTTTTTGGAAGAAGTAGAGACGATA 1605
Query 1636 AATCCAGAGGATTTGGAGAATTTGGATGGGAATCATTTAGAAGAAGGAGAGTTAAACGAC 1695
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1606 AATCCAGAGGATTTGGAGAATTTGGATGGGAATCATTTAGAAGAAGGAGAGTTAAATGAC 1665
Query 1696 AAAGGAGCAGTAGCAAGGAAGAAGAAGGCGTTTATACGGAGATTTGGTGATCTTCTTGTT 1755
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1666 AAAGGAGCAGTAGCAAGGAAGAAGAAGGCGTTTATACGTAGATTTGGTGATCTTCTTGTT 1725
Query 1756 AGGAGGAAAAGCTTAAGTTTCTCTCACAAGAAAGAATCTTCCACTGATTCACAAGATAAG 1815
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1726 AGGAGGAAAAGCTTAAGTTTCTCACACAAGAAAGAATCTTCCACTGATTCACAAGATAAG 1785
Query 1816 CAGCAACCTCAGACTCCGACTTCTCCGTCTCCGCCACTACCCCCGATGTCTCCTGAACCC 1875
||||||||||||||||| || ||||| |||||||||||||| ||||||||||| || |||
Sbjct 1786 CAGCAACCTCAGACTCCCACGTCTCCATCTCCGCCACTACCGCCGATGTCTCCGGAGCCC 1845
Query 1876 TGA 1878
|||
Sbjct 1846 TGA 1848
> AT4G35295.1 | Symbols: | homoserine kinase, putative / HSK,
putative | chr4:16795333-16796223 FORWARD LENGTH=336
Length=336
Score = 62.1 bits (33), Expect = 2e-08
Identities = 44/49 (90%), Gaps = 2/49 (4%)
Strand=Plus/Plus
Query 608 GCCAAACGAAAGAGAAGC-T-TGTGATTGCAGAAACAGAGCTCGAGGCT 654
||||||| | |||| ||| | ||||||||||||||||||||||||||||
Sbjct 51 GCCAAACCATAGAGCAGCTTGTGTGATTGCAGAAACAGAGCTCGAGGCT 99
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5