BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944013

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06150.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   353    6e-97
  AT5G65687.1 | Symbols:  | Major facilitator superfamily protein...   121    7e-27


> AT3G06150.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G19060.1); 
Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1861797-1864116 
REVERSE LENGTH=2188
Length=2188

 Score =  353 bits (191),  Expect = 6e-97
 Identities = 223/238 (94%), Gaps = 4/238 (2%)
 Strand=Plus/Plus

Query  21   ATGCTGGAGAAAGGAATGATTTTGCCTCCGGTACCGAGCCAATTGGTGCTTTTACGGCCA  80
            |||| |||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct  230  ATGCCGGAGAAAGGAATGATTTTCCCGCCGGTACCGAGCCAATTGGTGATTTTACGGCCA  289

Query  81   AACCCT-TTGCTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTTCTTCCTCATGTT  139
            | |||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct  290  AGCCCTCTT-CTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTGCTTCCTTATGTT  348

Query  140  AGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTGAGCCATGGAGATTCAA  199
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  349  AGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTCAGCCATGGAGATTCAA  408

Query  200  TGCATACTCTGTTCGAATCAGTCCTTCTCCGTCGCC-TTTAATGTCACCAAAACCCAA  256
            ||| |||||||||||||||||||||||||||||||| |||| ||||| | ||||||||
Sbjct  409  TGCTTACTCTGTTCGAATCAGTCCTTCTCCGTCGCCGTTTA-TGTCAACGAAACCCAA  465


> AT5G65687.1 | Symbols:  | Major facilitator superfamily protein 
| chr5:26269856-26272899 REVERSE LENGTH=1773
Length=1773

 Score =  121 bits (65),  Expect = 7e-27
 Identities = 87/96 (91%), Gaps = 7/96 (7%)
 Strand=Plus/Minus

Query  315  AGCTTCTTCTTTAGCCGGAGAATCTCTCTGGCCAACTTTTGTCATTATCTCT-T-T--CG  370
            ||||||||||||||||||||||||||||||||||||| | |||||||||||| | |  ||
Sbjct  157  AGCTTCTTCTTTAGCCGGAGAATCTCTCTGGCCAACTCTCGTCATTATCTCTGTCTTTCG  98

Query  371  CTGTCAGATTCAATTTTAACACTCTGTCTTTCTTTA  406
            ||||||||||||||   |||||||||||||||||||
Sbjct  97   CTGTCAGATTCAAT---AACACTCTGTCTTTCTTTA  65



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19353083365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5