BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944017 Length=1014 Score E Sequences producing significant alignments: (Bits) Value AT4G40070.1 | Symbols: | RING/U-box superfamily protein | chr4... 1413 0.0 > AT4G40070.1 | Symbols: | RING/U-box superfamily protein | chr4:18576418-18577774 FORWARD LENGTH=1357 Length=1357 Score = 1413 bits (765), Expect = 0.0 Identities = 939/1022 (92%), Gaps = 16/1022 (2%) Strand=Plus/Plus Query 1 CCGGCGTCGCTTCGAATGA---ACGATGACACGCGTCGAGTGTTTTAA-CCGTCTCCGTT 56 |||||||||||||||| || | |||||||||||||||||||||||| || || ||||| Sbjct 94 CCGGCGTCGCTTCGAACGACCGATGATGACACGCGTCGAGTGTTTTAATCC-TCACCGTT 152 Query 57 GGATTATCTTCTTCCACGTGGCAATCATCCTACAGAGCAAAGCCAATGCCCAATCATTCT 116 |||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 153 GGATTA---TCTTACACGTGGCAATCATCATACAGAGCAAAGCCAATGCCCAATCTTTCT 209 Query 117 CACCGAGTCCGCCTGATTTGCAACCGGGTCACACTCCGTCGAAGACCACGGTCTTTACCG 176 |||||||||| || || |||||| ||||||||||||||||||||||||| ||||| ||| Sbjct 210 CACCGAGTCCACCCGACTTGCAAACGGGTCACACTCCGTCGAAGACCACCGTCTTCGCCG 269 Query 177 TTCTCGTCGCCCTCTTCTTCCTCACCGGATTACTCTCCGTCTATATCCGCCATTGCACTC 236 ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 270 TTCTCGTAACCCTCTTCTTCCTCACCGGATTACTCTCCGTCTATATTCGCCATTGCGCTC 329 Query 237 GCTCTAACCCCGATTCCTCCACCAGATACTTCCGCCGCCGCGCTAACGACGACTGTTCAC 296 ||||||| || |||||||||||||||||||||||| ||| |||||||||| | |||||| Sbjct 330 GCTCTAATCCTGATTCCTCCACCAGATACTTCCGCAACCGAGCTAACGACGGCAGTTCAC 389 Query 297 GGCGAGGCGGACTTGACAACGCCGTCGTCGAAAGCTTCCCTGTTTTCGCTTACTCCACCG 356 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 390 GGCGAGGCGGTCTTGACAACGCCGTCGTCGAAAGCTTCCCTGTTTTCGCTTACTCCTCTG 449 Query 357 TTAAAGAATCGAAGATCGGATCCAAGGATTTAGAATGTGCGATTTGTCTCAACGAATTGG 416 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 450 TTAAAGAATCCAAAATCGGATCCAAGGATTTAGAATGTGCGATTTGTCTCAACGAATTAG 509 Query 417 AAGATCATGAAACAGTGCGATTGCTTCCGATTTGTAACCATTTGTTCCATATCGATTGTA 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 510 AAGATCATGAAACAGTGCGATTGCTTCCGATTTGTAACCATTTGTTCCATATCGATTGTA 569 Query 477 TCGACGCTTGGCTTTACTCGCACGCGACTTGCCCTGTTTGCAGATCTAATCTCACGGCGA 536 |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 570 TCGATACTTGGCTTTACTCGCACGCAACTTGCCCTGTTTGCAGATCTAATCTCACCGCGA 629 Query 537 AATCGGAA-AAATCCTGCGAAGAAGACGACGGTGTTCCGATAGCAGCGATGAGAGATCAC 595 ||||| || ||| || |||| |||||||||||||||||| |||||||||||||||| ||| Sbjct 630 AATCG-AATAAACCCGGCGATGAAGACGACGGTGTTCCGTTAGCAGCGATGAGAGACCAC 688 Query 596 GTCGTGATTGATATTGAGACCGTTGAGGCAGCGAAGAGCCACCACCGACGGCTGAGTTCT 655 |||||| ||||||||||||||||||||| |||||| ||||||||||||||| |||||||| Sbjct 689 GTCGTGGTTGATATTGAGACCGTTGAGGTAGCGAAAAGCCACCACCGACGGTTGAGTTCT 748 Query 656 GAAATCTCCGGTAAGTTTCCGAGATCGAATTCAACGGGTCATTCGATGGATCGATTCAGT 715 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 749 GAAATCTCCGGTAAGTTTCCGAGATCGAATTCGACGGGTCATTCGATGGATCGATTCAGT 808 Query 716 GACGGCACTGAGAGGTTTACTCTGCGGTTACCGGATGATGTGAAGAGGCAAATAATGGCG 775 |||||||| ||||||||||||||||||||||| |||||||| |||| || | |||||||| Sbjct 809 GACGGCACAGAGAGGTTTACTCTGCGGTTACCAGATGATGTAAAGATGCGATTAATGGCG 868 Query 776 GTTAAAGGACGTAGGCTGAAACGAACGAGAAGCTTTGACATTGATTTGACGGCGGAGA-A 834 || |||||||||||| ||||||||||||||||||||||| |||||||||||||||| | | Sbjct 869 GTGAAAGGACGTAGGTTGAAACGAACGAGAAGCTTTGACGTTGATTTGACGGCGGA-ACA 927 Query 835 GTATTGCCGGAGCGGTGAGGAAAGCAGTTACAA-AGTCGGGT-TGGGTGAGAAGGCAGAT 892 ||||||||||||||||||||||||||| ||| | |||||| ||| || |||| | | | Sbjct 928 CTATTGCCGGAGCGGTGAGGAAAGCAGTAACACGA-TCGGGTCTGG-TGCGAAGTCGGGT 985 Query 893 CGGGTCAACTGGCCGGATCGATGGGGTTTGACTTTGTTCGTTCCAAAGTCAAACTCGGGT 952 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 986 CGGGTCAACTGGCCGGATCGATGGGGTTTGACTTTGTTCGTTTCGAAGTCAAACTCGGGT 1045 Query 953 TCCGTTAGATCACAGAAAGCTAACGGTGAACCATTGAAATGACCCACGTTATATTCTGCC 1012 |||||||||||||||||| ||||||||||||| ||||||||| | |||||||||| |||| Sbjct 1046 TCCGTTAGATCACAGAAATCTAACGGTGAACCGTTGAAATGAACGACGTTATATTTTGCC 1105 Query 1013 GT 1014 || Sbjct 1106 GT 1107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49681571383 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5