BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944017
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT4G40070.1 | Symbols: | RING/U-box superfamily protein | chr4... 1413 0.0
> AT4G40070.1 | Symbols: | RING/U-box superfamily protein | chr4:18576418-18577774
FORWARD LENGTH=1357
Length=1357
Score = 1413 bits (765), Expect = 0.0
Identities = 939/1022 (92%), Gaps = 16/1022 (2%)
Strand=Plus/Plus
Query 1 CCGGCGTCGCTTCGAATGA---ACGATGACACGCGTCGAGTGTTTTAA-CCGTCTCCGTT 56
|||||||||||||||| || | |||||||||||||||||||||||| || || |||||
Sbjct 94 CCGGCGTCGCTTCGAACGACCGATGATGACACGCGTCGAGTGTTTTAATCC-TCACCGTT 152
Query 57 GGATTATCTTCTTCCACGTGGCAATCATCCTACAGAGCAAAGCCAATGCCCAATCATTCT 116
|||||| |||| ||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 153 GGATTA---TCTTACACGTGGCAATCATCATACAGAGCAAAGCCAATGCCCAATCTTTCT 209
Query 117 CACCGAGTCCGCCTGATTTGCAACCGGGTCACACTCCGTCGAAGACCACGGTCTTTACCG 176
|||||||||| || || |||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 210 CACCGAGTCCACCCGACTTGCAAACGGGTCACACTCCGTCGAAGACCACCGTCTTCGCCG 269
Query 177 TTCTCGTCGCCCTCTTCTTCCTCACCGGATTACTCTCCGTCTATATCCGCCATTGCACTC 236
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 270 TTCTCGTAACCCTCTTCTTCCTCACCGGATTACTCTCCGTCTATATTCGCCATTGCGCTC 329
Query 237 GCTCTAACCCCGATTCCTCCACCAGATACTTCCGCCGCCGCGCTAACGACGACTGTTCAC 296
||||||| || |||||||||||||||||||||||| ||| |||||||||| | ||||||
Sbjct 330 GCTCTAATCCTGATTCCTCCACCAGATACTTCCGCAACCGAGCTAACGACGGCAGTTCAC 389
Query 297 GGCGAGGCGGACTTGACAACGCCGTCGTCGAAAGCTTCCCTGTTTTCGCTTACTCCACCG 356
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 390 GGCGAGGCGGTCTTGACAACGCCGTCGTCGAAAGCTTCCCTGTTTTCGCTTACTCCTCTG 449
Query 357 TTAAAGAATCGAAGATCGGATCCAAGGATTTAGAATGTGCGATTTGTCTCAACGAATTGG 416
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 450 TTAAAGAATCCAAAATCGGATCCAAGGATTTAGAATGTGCGATTTGTCTCAACGAATTAG 509
Query 417 AAGATCATGAAACAGTGCGATTGCTTCCGATTTGTAACCATTTGTTCCATATCGATTGTA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AAGATCATGAAACAGTGCGATTGCTTCCGATTTGTAACCATTTGTTCCATATCGATTGTA 569
Query 477 TCGACGCTTGGCTTTACTCGCACGCGACTTGCCCTGTTTGCAGATCTAATCTCACGGCGA 536
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 570 TCGATACTTGGCTTTACTCGCACGCAACTTGCCCTGTTTGCAGATCTAATCTCACCGCGA 629
Query 537 AATCGGAA-AAATCCTGCGAAGAAGACGACGGTGTTCCGATAGCAGCGATGAGAGATCAC 595
||||| || ||| || |||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 630 AATCG-AATAAACCCGGCGATGAAGACGACGGTGTTCCGTTAGCAGCGATGAGAGACCAC 688
Query 596 GTCGTGATTGATATTGAGACCGTTGAGGCAGCGAAGAGCCACCACCGACGGCTGAGTTCT 655
|||||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 689 GTCGTGGTTGATATTGAGACCGTTGAGGTAGCGAAAAGCCACCACCGACGGTTGAGTTCT 748
Query 656 GAAATCTCCGGTAAGTTTCCGAGATCGAATTCAACGGGTCATTCGATGGATCGATTCAGT 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 749 GAAATCTCCGGTAAGTTTCCGAGATCGAATTCGACGGGTCATTCGATGGATCGATTCAGT 808
Query 716 GACGGCACTGAGAGGTTTACTCTGCGGTTACCGGATGATGTGAAGAGGCAAATAATGGCG 775
|||||||| ||||||||||||||||||||||| |||||||| |||| || | ||||||||
Sbjct 809 GACGGCACAGAGAGGTTTACTCTGCGGTTACCAGATGATGTAAAGATGCGATTAATGGCG 868
Query 776 GTTAAAGGACGTAGGCTGAAACGAACGAGAAGCTTTGACATTGATTTGACGGCGGAGA-A 834
|| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |
Sbjct 869 GTGAAAGGACGTAGGTTGAAACGAACGAGAAGCTTTGACGTTGATTTGACGGCGGA-ACA 927
Query 835 GTATTGCCGGAGCGGTGAGGAAAGCAGTTACAA-AGTCGGGT-TGGGTGAGAAGGCAGAT 892
||||||||||||||||||||||||||| ||| | |||||| ||| || |||| | | |
Sbjct 928 CTATTGCCGGAGCGGTGAGGAAAGCAGTAACACGA-TCGGGTCTGG-TGCGAAGTCGGGT 985
Query 893 CGGGTCAACTGGCCGGATCGATGGGGTTTGACTTTGTTCGTTCCAAAGTCAAACTCGGGT 952
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 986 CGGGTCAACTGGCCGGATCGATGGGGTTTGACTTTGTTCGTTTCGAAGTCAAACTCGGGT 1045
Query 953 TCCGTTAGATCACAGAAAGCTAACGGTGAACCATTGAAATGACCCACGTTATATTCTGCC 1012
|||||||||||||||||| ||||||||||||| ||||||||| | |||||||||| ||||
Sbjct 1046 TCCGTTAGATCACAGAAATCTAACGGTGAACCGTTGAAATGAACGACGTTATATTTTGCC 1105
Query 1013 GT 1014
||
Sbjct 1106 GT 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5