BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944019 Length=473 Score E Sequences producing significant alignments: (Bits) Value AT4G40090.1 | Symbols: AGP3 | arabinogalactan protein 3 | chr4:... 640 0.0 > AT4G40090.1 | Symbols: AGP3 | arabinogalactan protein 3 | chr4:18580838-18581585 REVERSE LENGTH=748 Length=748 Score = 640 bits (346), Expect = 0.0 Identities = 432/472 (92%), Gaps = 11/472 (2%) Strand=Plus/Plus Query 1 AGACATTGAAACAGAGAGAGATGGCTCTTAAGACATTGCAAGCTTTGATCTTTCTTGGTC 60 |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 62 AGACATTGAAACTGAGAGAAATGGCTCTTAAGACATTGCAAGCTCTGATCTTTCTTGGTC 121 Query 61 TATTTGCCACCTCATGTCTCGCTCAAGCTCCGGCTCCTGCACCCATCACGCTTCTCCCTC 120 |||||||| |||||||||| ||||||||||||||||| ||||| |||||| ||||||||| Sbjct 122 TATTTGCCGCCTCATGTCTAGCTCAAGCTCCGGCTCCGGCACCTATCACGTTTCTCCCTC 181 Query 121 CGGTAGAGTCTCCTTCTCCGGTAGAGT-CACCAACTGCAGAGCCACCGTCT-CCGTTTGC 178 ||||||||||||||||||| || | | ||||||||||||| |||||| || ||| |||| Sbjct 182 CGGTAGAGTCTCCTTCTCCAGTTG-TTACACCAACTGCAGAACCACCGGCTCCCG-TTGC 239 Query 179 TTCACCCCCGGTTCCAGTCGAA-GAACCCACTCCGGTTCCAACAACTCCACCAACCGTCT 237 ||||||||| |||||| | || ||||||||||||||||||||||||||||||||||||| Sbjct 240 TTCACCCCCTATTCCAG-CCAACGAACCCACTCCGGTTCCAACAACTCCACCAACCGTCT 298 Query 238 CACCCCCGACCACGTCGCCTACAACTTCCCCTGTCGCTTCTCCTCCTAAAACACATGGTT 297 ||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| || Sbjct 299 CACCCCCGACCACGTCGCCCACAACTTCCCCTGTCGCTTCTCCTCCTAAACCATATGCTT 358 Query 298 TGGCTCCAGGGCCATCAGGTCCAACACCAGCTCCTGCTCCGGCTCCTAGAGCAGACGGAC 357 |||||||||| ||||||||||||||||||||||| || || ||||||||||||||||| | Sbjct 359 TGGCTCCAGGCCCATCAGGTCCAACACCAGCTCCGGCCCCCGCTCCTAGAGCAGACGGGC 418 Query 358 CGGTAGCTGACTCAGCATTGACTAACAAAGCTTTCCTTGTGAGCAC-GCTCATTGCCGGA 416 |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| Sbjct 419 CGGTAGCTGACTCAGCATTGACTAACAAAGCTTTCCTTGTTAGCACAG-TCATTGCCGGA 477 Query 417 GCCTTGTACGCCGTCGTTTTGGCTTAGAGGGTGCCCTGCGTATTACTCTATC 468 |||||||||||||| ||| |||||| || ||||| |||||||||||||||| Sbjct 478 GCCTTGTACGCCGT--TTT-GGCTTAAAGAGTGCCTTGCGTATTACTCTATC 526 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22504897856 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5