BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944019

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G40090.1 | Symbols: AGP3 | arabinogalactan protein 3 | chr4:...   640    0.0  


> AT4G40090.1 | Symbols: AGP3 | arabinogalactan protein 3 | chr4:18580838-18581585 
REVERSE LENGTH=748
Length=748

 Score =  640 bits (346),  Expect = 0.0
 Identities = 432/472 (92%), Gaps = 11/472 (2%)
 Strand=Plus/Plus

Query  1    AGACATTGAAACAGAGAGAGATGGCTCTTAAGACATTGCAAGCTTTGATCTTTCTTGGTC  60
            |||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct  62   AGACATTGAAACTGAGAGAAATGGCTCTTAAGACATTGCAAGCTCTGATCTTTCTTGGTC  121

Query  61   TATTTGCCACCTCATGTCTCGCTCAAGCTCCGGCTCCTGCACCCATCACGCTTCTCCCTC  120
            |||||||| |||||||||| ||||||||||||||||| ||||| |||||| |||||||||
Sbjct  122  TATTTGCCGCCTCATGTCTAGCTCAAGCTCCGGCTCCGGCACCTATCACGTTTCTCCCTC  181

Query  121  CGGTAGAGTCTCCTTCTCCGGTAGAGT-CACCAACTGCAGAGCCACCGTCT-CCGTTTGC  178
            ||||||||||||||||||| || |  | ||||||||||||| |||||| || ||| ||||
Sbjct  182  CGGTAGAGTCTCCTTCTCCAGTTG-TTACACCAACTGCAGAACCACCGGCTCCCG-TTGC  239

Query  179  TTCACCCCCGGTTCCAGTCGAA-GAACCCACTCCGGTTCCAACAACTCCACCAACCGTCT  237
            |||||||||  |||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct  240  TTCACCCCCTATTCCAG-CCAACGAACCCACTCCGGTTCCAACAACTCCACCAACCGTCT  298

Query  238  CACCCCCGACCACGTCGCCTACAACTTCCCCTGTCGCTTCTCCTCCTAAAACACATGGTT  297
            ||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| ||
Sbjct  299  CACCCCCGACCACGTCGCCCACAACTTCCCCTGTCGCTTCTCCTCCTAAACCATATGCTT  358

Query  298  TGGCTCCAGGGCCATCAGGTCCAACACCAGCTCCTGCTCCGGCTCCTAGAGCAGACGGAC  357
            |||||||||| ||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct  359  TGGCTCCAGGCCCATCAGGTCCAACACCAGCTCCGGCCCCCGCTCCTAGAGCAGACGGGC  418

Query  358  CGGTAGCTGACTCAGCATTGACTAACAAAGCTTTCCTTGTGAGCAC-GCTCATTGCCGGA  416
            |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct  419  CGGTAGCTGACTCAGCATTGACTAACAAAGCTTTCCTTGTTAGCACAG-TCATTGCCGGA  477

Query  417  GCCTTGTACGCCGTCGTTTTGGCTTAGAGGGTGCCCTGCGTATTACTCTATC  468
            ||||||||||||||  ||| |||||| || ||||| ||||||||||||||||
Sbjct  478  GCCTTGTACGCCGT--TTT-GGCTTAAAGAGTGCCTTGCGTATTACTCTATC  526



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22504897856


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5